Detail information of g532575


Location
GeneChrStartEndStrand
g532575Scaffold_91940:HRSCAF_4750263720358224-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrMQM13645.12.4e-111hypothetical protein
SwissprotQ5QM27.13.5e-107Tubby-like F-box protein 9
trEMBLD6MKK03.2e-118Transcription factor (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G53320.163.122e-106 382AtTLP7;TLP7tubby like protein 7

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag454822.t1; g532575.t1
Allium fistulosumAfisC2G04119; AfisC3G04589
Allium sativumAsa2G03644.1
Arabidopsis thalianaAT1G53320.1
Oryza sativaLOC_Os01g48370.1; LOC_Os05g43850.1; LOC_Os05g48670.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00646.30F-boxDomain12917228.31.1e-06
PF01167.15TubDomain194403202.17.9e-60

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001067Fregulatory region nucleic acid binding
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005543Fphospholipid binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0008289Flipid binding
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0009536Cplastid
GO:0009555Ppollen development
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009620Presponse to fungus
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0044212Ftranscription regulatory region DNA binding
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0035091Fphosphatidylinositol binding
GO:0043167Fion binding
GO:0043168Fanion binding
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0048229Pgametophyte development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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