result

Gene information

Detail information of g534213


Location
GeneChrStartEndStrand
g534213CHR6194039199194050346+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020245731.13.5e-150transcription factor E2FA
SwissprotQ9FNY0.12.0e-97E2F transcription factor-3
trEMBLA0A6I9RRU97.0e-148transcription factor E2FB isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G36010.148.979e-101 363ATE2FA;E2F3E2F transcription factor 3

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Ortholog group
SpeciesGenes
Allium cepag134652.t1; g534213.t1
Allium fistulosumAfisC1G07709; AfisC6G01905
Allium sativumAsa7G06346.1; Asa8G04689.1
Arabidopsis thalianaAT2G36010.1; AT2G36010.2; AT2G36010.3
Oryza sativaLOC_Os02g33430.1; LOC_Os02g33430.2; LOC_Os04g33950.1; LOC_Os12g06200.1; LOC_Os12g06200.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02319.17E2F_TDPDomain13820184.53.4e-24
PF16421.2E2F_CC-MBDomain21830583.21.2e-23

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000902Pcell morphogenesis
GO:0000904Pcell morphogenesis involved in differentiation
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0051726Pregulation of cell cycle
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0008284Ppositive regulation of cell proliferation
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010026Ptrichome differentiation
GO:0010033Presponse to organic substance
GO:0010090Ptrichome morphogenesis
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032502Pdevelopmental process
GO:0032989Pcellular component morphogenesis
GO:0042127Pregulation of cell proliferation
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045787Ppositive regulation of cell cycle
GO:0048468Pcell development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051302Pregulation of cell division
GO:0051445Pregulation of meiotic cell cycle
GO:0051446Ppositive regulation of meiotic cell cycle
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090558Pplant epidermis development
GO:0090626Pplant epidermis morphogenesis
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000243Ppositive regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K06620E2F3; transcription factor E2F3EC:- Cell cycleko04110
Cellular senescenceko04218
K12590RRP46, EXOSC5; exosome complex component RRP46EC:- RNA degradationko03018

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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