result

Gene information

Detail information of g534426

Location

Gene	Chr	Start	End	Strand
g534426	Scaffold_92156:HRSCAF_475242	190020	191837	-

Sequences

CDS

Protein

Gene

>g534426.t1
ATGGGTTGCAATGGATCTCCATTTTTCCCTCCTAACTTCCTTCTGCAAATTCAAACGCCTCATGAAACTACAGAAGATCATCATCGACGACAACAGCAAAATACAAATCCTTTTTCCTCTCCGCTCCATACCAATCCCGAAGAATTTAGAGGTATAAAACTACTTGCAATTAGTAAAACGTTAGGTTGACTTCATGGTTAATTTTACATTTTTATTGAACTAATTACTTTGTAGGTATGGCTACAATGCTAGGGAAAAGATCGATGTCGTTTTCAGGCATCGAACCATGCGATGAAATGACCGGAGAAGATGACATTTCAGACGACTGTTCTCAGTTGATAGGGGAGAAGAAAAGAAGACTTACCATAGAACAAGTTAGGACTTTAGAAAAGAGTTTCGAAGTTGGGAACAAACTGGAACCAGAAAGGAAAATGCAACTGGCAAGAGCACTTGGGCTTCAGCCCAGGCAGGTTGCTATTTGGTTTCAAAACAGAAGAGCTAGATGGAAGACAAAGCAATTGGAGAAGGATTATGAGGTGCTTAAGAGAAAATTTGATGCTGTTAGAGCAGAGAATGAGTCTCTCCTCTCCCAAAACAAAAAACTTCAAGCTGAGGTGATTTAACTGATTATGATATATCATAACTCTGCTATGGTTTCAATATTAATTAGTCATTAAAACACACTTGAAAAGGTAAAGATCTACTAAAGAAGACATCGTCGTGCGTCCATTTTTACTTTACACGATCTACTTTGGGATTAGTAATAAATTTGTGTTTTGAAGTTTGAATCTTTTGAGAAAGAAAAAGTTTTTTTTTCCCAATCATTGATGAATCATAGTTTCTATCTTTTCATCTTTCATTAAATTTCATACTTTTTATATCACTATTCAAGATAAGAAATGTCATCTGTTAGTAACGTTTAATTTCATCTTTGTTGGCTCATCACATTTATTTTTGTTTCAAGAAAAGACACCTACAATTTTGTTATAATAACACTGGATTGTTCACAGAAGTGTCTATTTCAGTGGGATGTCCTGCCATTTAATTTGCCACTGAACTAATTAATTGCTTCAGAACTTTAGCTGTCTCATTTCACAACAGCAATCTCTTCATGGACCATTTCCAGAATTCGTTATTATTTTTTCCCTTTGAGTAAATCATCTCTTCTAGAATGTTGTTTATCTTGTCAAAGATATTGGTTACTAATACATATTATTACAGATAATGAATCTTAGTGGAAGAGAACCGACTTCGGAGCTTATAAACCTGAACAAAGAAACTGAGGGATCATGCAGCAACAGAAGCGAAAACAGCTCCGAAGTTAATTTAGATTTATCAAGAACACAGACAATAGAAAGCCCCATCGATGATAATAATGATAATAGCAAGAATAATGTGCAACAAAGCATTACGTTCTTTCCATCAAGTATAAGACCACCTTCTATGATTCACCTTCTACACAATTCCAGTACTAGGGAAGAGTTACAATGCCCAAAAATAGAACAAAGTGGTGTACCTGATGAAAACTTTAGCAATTTGTTATGTGGTATGGATGATCAATCTGCATTTTGGTCGTGGTCGGATCATCAAAGTTTCCATTAAGTTTGAATATTTGATGGATGGACGACAGTTGAGAAATCTATATATATGATGCTTATTGGTTTATCATTGAGTTCAGAGGACTACGAAGGTACAAGAAGAATAAAAAGTACTTTTCTTATATATTTGGTAGTGATTAGTAGAGTTTATACAGAGCTCTTAATTGCTTCTTTTCTCCTATTGAATCTACTACTATTTACTGATGCAGCTGTGAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK65242.1	6.8e-99	uncharacterized protein A4U43_C07F35130
Swissprot	Q8LC03.2	4.1e-48	Homeodomain transcription factor ATHB-13
trEMBL	A0A5P1EH75	4.9e-99	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69780.1	52.77	9e-71	263	ATHB13	Homeobox-leucine zipper protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g534426	AT1G69780.1	307	122	11	1	300	1	291	52.77	9e-71	263
g534426	AT1G26960.1	309	99	10	1	300	1	252	46.60	4e-60	228
g534426	AT3G01220.1	259	116	9	46	298	42	275	43.24	2e-50	196

Ortholog group

Species	Genes
Allium cepa	g220774.t1; g534426.t1
Allium fistulosum	AfisC1G05115; AfisC1G05155; AfisC4G00743; AfisC6G00907; AfisC6G03771; AfisC8G00441; AfisC8G03331
Allium sativum	Asa1G04397.1; Asa1G04399.1; Asa4G00762.1
Arabidopsis thaliana	AT1G26960.1; AT1G69780.1
Oryza sativa	LOC_Os03g07450.1; LOC_Os10g26500.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	89	142	58.2	4.9e-16
PF02183.15	HALZ	Family	144	184	54.8	7.1e-15

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network