result

Gene information

Detail information of g536218

Location

Gene	Chr	Start	End	Strand
g536218	Scaffold_92347:HRSCAF_475433	952869	955118	+

Sequences

CDS

Protein

Gene

>g536218.t1
ATGGCAATCATCTCCATTCATAGTAATCCTCCGTTAAACCAGTAATTTTTTAAAGAAATATGCATTTTTGCCCGCACACTCAATTTAAGCAATTAACGCAACTATTTATTTTAGCCATTGGCATTTGAGTCTTGCTCTTTCTTCTATTATCTATACATATATAAAGTTAAGTTAGTGTTCCTTTTTTCATCTAGTTTTCTGTGCTAGAGATAAAAATATGGGAAGAGGAAGAATAGAGATAAAGAAAATAGAAAACCCAACTAATAGGCAAGTCACTTATTCAAAAAGGAGGCTTGGAATTATGAAAAAGGCCAAAGAACTCACTGTTCTATGTGATGCTCAAGTATCTGTCATCATGTTTTCCAGCACTGGCAAGTTTGCAGAATACTGCAGCCCTTCTACCAGGTTATTAACACATATTATTCTCTTGGTACTATATATGTTTGTTTTTGTTATATATGAAATGGTCAATGTGGTTGATTATATGATGTGATACAGCACCAAGAAGATTGTGGATAGATATCAAAAGGAAACCGGCATTGATTTGTGGAATGATTTGTATGAGGTAACTGAAAACGTGCATATGTTCTTTATCAATAGTCTATAAATTTTTGTGTGCATGTAAAATTATGTCTGGTTTGATGTAGAGGATGCAAAGTACATTGAGGAGCCTTGAGGAAGATAACCAGAAACTCCGAAAAGAGATAAGGTGACTAGAATTCAAGATGCATGTGAAATTATATCAGTTTTATCACTGATTTTATTACAAACAATTTTGTTACATGTAGGCAGAGAATAGGAGAAGATCTTGATGGAATGAGCATCGATGAATTGCGGGGGCTTGAGCAAAGTTTGGATGACACACTGATGCATGTTCGTCAAAGGAAAGTAAGTTTTATGCATAATATGGATACTTTGAATTTCATGAATGATTGTATATTTGTTTGCTACATCAAATAGCAGAGGAATACAATATGAATAGGACTGTGTTACTGTATGTTGACATCAATGGAATCATATTTCGTATGTTGCTATATCGAATTTCATATATGTTGCACTGTCAATAATAGTCTGTTTCTATTTTTCTAAGAATTTATTTCCTACTTGCAATTCATGATGAAAAAAAAATCCATAGGGAGTGTTTATGTGATTTTAATACATGTTGGAACCTCAAACATCTAATCCTTGATTGCAGTAGGATTTAAGTTTTGGTTTATTGGTAAATCATAAATTATGAAATTAGTCAGGAAACTATCAAATAAATGCAGATGTAAGGTGTCATATGTAGCTTTGGTCTCAAATGACAATGATATAAAGGAGCATTATTATTGATTATTTTTTAAATAATTCAGGCATGTCAAGGAATTTCAAACCAATACAAGCGTTTGATTTTTTACTAATTACCATAATATATTCAATGATTATCTGTTGGTAATATCAAAAAGAAAAGAAAAGGAAAAAAAAATAAGAAAAAGAAAAAACTTCCATTTTGCAAAACACAAAAGATTCTCTTGTTGTGATCAAAATTAAAAGATATATTTGGTTTTTTGATTGTTAACACATGTATTGTGTTGCAGTACCATGTTATAGCTACGCAGACAGAAACATACAAAAAGAAGGTATGTCTACAATATCCAATTATTATTCTATATTCTATATACTGTACCTATATTGCTATTATAATGCATACTCTACACTACAAGCACAAGCTAGCAAGGACTCAAGTTCAAACCAAGACAGTGACTCAGAAACAGTTTTACTGTATATATACATATGTGTATATATATGTATATACATATGTATATGTATGTATGTATATGTATATATTTACAATGCATGATTTGCAGAAAATATAGTTCCAAACATGGAGCCATAAGAAAATTATTACTAACAGAAGAAAATGGTAAAGTACTAATCTTCATTCTACCTGTCAATTTGTGTAGTTGAGAAGCATCCACGAAGCACATAAGGCCATGCTTCATGCACTGGTCAGTAAATGCAAAGTTCCGTCTGTATAAAATTTTATCAAAATTACAGTGCATTATTTTGAAGTATCTGTAATACTGACATGTTTTTCTATATTTGGTACAGGACATGGAAGAAGATCAACTTGAATACACTTTCATGACTGAAGATGCAAATGACAATATAGAAGCTAATGGTATGCGTATGTTTACATTTCCAGTACATTCAAACCACCAAAATGTTCTAGGTTTCGGTTATGGATCCCACGATCTGAGCCATGGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263645.1	7.8e-80	MADS-box transcription factor 16-like isoform X1
Swissprot	Q003J2.1	1.9e-62	VviAP3b
trEMBL	G8FNH6	1.3e-76	APETALA3-like protein 4 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54340.1	47.06	4e-50	194	AP3;ATAP3	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g536218	AT3G54340.1	221	109	2	16	232	1	217	47.06	4e-50	194
g536218	AT5G20240.1	216	112	4	16	220	1	199	35.19	1e-31	133
g536218	AT5G23260.2	179	107	1	16	192	1	179	39.11	5e-31	131

Ortholog group

Species	Genes
Allium cepa	g137611.t1; g424573.t1; g536218.t1
Allium fistulosum	AfisC1G01208; AfisC1G02131; AfisC3G01125; AfisC4G01915; AfisC4G03414; AfisC4G04014; AfisC7G06283; AfisC8G05089
Allium sativum	Asa0G00348.1; Asa4G02647.1; Asa4G03347.1; Asa4G03348.1
Arabidopsis thaliana	AT3G54340.1
Oryza sativa	LOC_Os06g49840.1; LOC_Os06g49840.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	25	72	78.4	1.8e-22
PF01486.14	K-box	Family	99	181	69.0	2.7e-19

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0010093	P	specification of floral organ identity
GO:0010097	P	specification of stamen identity
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0022414	P	reproductive process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048444	P	floral organ morphogenesis
GO:0048448	P	stamen morphogenesis
GO:0048449	P	floral organ formation
GO:0048455	P	stamen formation
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0061458	P	reproductive system development
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network