result

Gene information

Detail information of g539839


Location
GeneChrStartEndStrand
g539839Scaffold_92776:HRSCAF_475862665805672379-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020264457.11.1e-69uncharacterized protein LOC109840292 isoform X2
trEMBLA0A2G9H1213.3e-44Histone acetyltransferase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G37520.137.556e-46 181Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag219655.t1; g414951.t1; g539839.t1
Allium fistulosumAfisC1G04998; AfisC6G01777; AfisC6G01786
Allium sativumAsa4G05400.1; Asa8G04781.1
Arabidopsis thalianaAT3G53680.1
Oryza sativaLOC_Os03g17050.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF16135.2JasFamily8514265.72.9e-18

Gene Ontology
AccessionOntologyName
GO:0000118Chistone deacetylase complex
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0001085FRNA polymerase II transcription factor binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0003674Fmolecular_function
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005813Ccentrosome
GO:0005815Cmicrotubule organizing center
GO:0005856Ccytoskeleton
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0015630Cmicrotubule cytoskeleton
GO:0016043Pcellular component organization
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016581CNuRD complex
GO:0017053Ctranscriptional repressor complex
GO:0019899Fenzyme binding
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0042826Fhistone deacetylase binding
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044430Ccytoskeletal part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050808Psynapse organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070491Frepressing transcription factor binding
GO:0070603CSWI/SNF superfamily-type complex
GO:0071840Pcellular component organization or biogenesis
GO:0072553Pterminal button organization
GO:0080090Pregulation of primary metabolic process
GO:0090545CCHD-type complex
GO:0090568Cnuclear transcriptional repressor complex
GO:1902494Ccatalytic complex
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1904949CATPase complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0099172

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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