result

Gene information

Detail information of g540239

Location

Gene	Chr	Start	End	Strand
g540239	Scaffold_92823:HRSCAF_475909	291461	297270	-

Sequences

CDS

>g540239.t1
ATGGGTAGAGATGACTCATCGTGGGAAAATGTGAACGTTGAGTCTGTGCGTGAAGCAAAAATAACCGAGCAATATCTTCCACTGAAGTTCTGGTCACTTCTCGGTGCACGAATGGTGAGAGAAGCAGCAGCTGGGAAAGGAACCCGACTGGGGAAATACGATATTGGGAGAACCCTCGGCGAGGGCAATTTCGGTAAAGTCAAGTTTGCCCGCCACGTCGATAACGGACGTCCTTTCGCCATTAAGATTCTCGATCGGAAACGGATACAGTCCCTTAAGATCGACGATCAGATCAAGAGAGAGATTAATACTTTGAAGTTGCTTAAGCATCCTAATGTTGTTAGTTTGCACGAGGTTTCAGCAAGCAAAACTAAAATTTATATGGTCCTCGAATATGTAAACGGAGGCGAATTATTTGACAAAATTGAGTCTAAAGGTAGATTAACAGAACGCGAAGGTCGAAGGCTTTTCCAACAATTGATTGATGCTATTAGCTATTGCCACAATAAAGGTGTCTACCACAGAGATTTGAAGCCTGAAAATCTTCTTCTTGATTCAAAAGGGGATATTAAGATATCAGATTTTGGTCTCAGTGCATTACCGCAGCATCTTGGTACGGATGGATTGCTGCACACAACTTGTGGGAGCCCTAATTATATTGCCCCTGAAGTGCTGTCAAATAGAGGATATGATGGTGCTATGTCCGACATATGGTCTTGTGGAGTCATCCTATATGTCATACTTACAGGAGCTCTTCCATTTGATGATAGAAACATGGCTGTCCTATATCAAAAGATTTTTCGAGGAGACTTCCAGATTCCTAAATGGCTATCTCGTGGAGCACATAACCTAATCCAAAGGATCCTTGATCCTAACCCTAACACTCGGATAAATGTGGATGGAATAAAAACAGATGAATGGTTCAAACAGAACTATGTTCCTGTTTCCCCATGTGACGACGACGATGATGGTGTTACAACTTTCAACAATGTTGATGTAACAATCAAAGAGTCCATTGAGTCAGATGACATTAGGAATCAAAATTCTACCTTGATTAATGCCTTCCAACTAATTGGAATGTCCTCATTTCTGGATCTCTCTGGCTTTTTCGAAACGGAGACTGCCTCTGAAAGGAAGATCAGGTTCACCTCAAATCATTCCCCGAAAGACCTATTTGAGGAGATTGAGGGCATTGTCACTGAGATGGGATATCATGTTCATAGAGGACATGGCAAGTTGAAAGTTATGCAAAGGAATAATAACTCATATTGCCCAACTAGCCCAGGGTCCCTTTCAGTTGCTGCTGAGCTGTTCGAACTCAATCCATCACTTTACGTCGTTGAGCTAAGGAAGTCTCATGGAGATTCCTCATTATACAGACAGTTATGCACAAAACTGTCTGATGATTTAGGTGTATGTGAAAGCCATCAACTCTCAATACCGCACTCAATTATGCAGGATTTAAGTCATTTTGATGGAAATCTGTCTGTAATTGCTGCCTGA

Protein

Gene

>g540239.t1
ATGGGTAGAGATGACTCATCGTGGGAAAATGTGAACGTTGAGTCTGTGCGTGAAGCGTACGTGGGTTGAGGCAAAGACTAAAATATATCCTTTGGAGGTATAAAGTCAGAAACGACTTCAGTTTGACTAAGTTGACCAACTATTTGCTCTACATGTATATATACCTACATTAGTGTACCATCTATTGAAAAAGTAAAAAAAAATTGAAAGGCAAAGGAATAAATGAATCCAAGAAACAAGAGCCACTCTGGAAAAAAAAGGCTCAATGATTAGGTGCGATCTCGTGCTTTGCCATATGTTCCCACCTATAAAAGCAACTTATCTTCTACTCCCATCATAATATATATACCAAATAAGAAAAATAACCGAGCAATATCTTCCACTGAAGTTCTGGTCACTTCTCGGTGCACGAATGGTGAGAGAAGCAGCAGCTGGGAAAGGAACCCGACTGGGGAAATACGATATTGGGAGAACCCTCGGCGAGGGCAATTTCGGTAAAGTCAAGTTTGCCCGCCACGTCGATAACGGACGTCCTTTCGCCATTAAGATTCTCGATCGGAAACGGATACAGTCCCTTAAGATCGACGATCAGGTACTCAACGCCATTCAAGGAATATAGTTTGGAAATGGTTGGATGAAACTTTAGTGTTGATTTTGGGTAATTATTGTACTGTTGTTGCAGATCAAGAGAGAGATTAATACTTTGAAGTTGCTTAAGCATCCTAATGTTGTTAGTTTGCACGAGGTCAGTATTCAAAATTTGCTTTTATTATTTTGATGATCTGTTGGATTTTGATTTATCGAGTGCAGATTATTTTGGTATTCATATTTCACTGTGTACCTAAGATGATCGAATTCTTTGAAAAGGAAAACCGAAATATTATTATAATGAACTCTAAAACTTTTATGATTATATCCAACAGGAAAAGTGGCAGCAGCTAGATTGAGTAATCATAGTAATAAACTGTTCGTTACTTTCCATGAAAAAAACTGAATTTCGCTGTTATTGAGAACAATTATTAAAACGTGTTTCAAAATTATGTTTTGTATGTCTACATTAACACTATGTATGTCTACGTTAACATAAAACTCAGGAAAAGTTACAAGTAATGTCTGTTGTTAAAGCACAATTATAACGCGTAATTGAATTGAAAATCTAACAGAGTCAAGGTGGAATTAAGAGCTATAACTAGGATACTTCATCATACATACCATTTACTGCTATACTCCCAATTCAAACTTCCTACTGTAATTTTTGGAATCATAATAATGGTTCAGAAGTGAATTGGTTAGGTTGACTATTAAGTAAAAATAACGATTATACGAGTTCATTCTAAGTAGAGTTAACAAAACTCATATGAAGAAGTCAATAATAAATCAAGAGGTGATGAAATAAGTCATTGCAAAACATGTTCTAAGTGCATTAGAATTCTATTAATCACGATTGTTATCTGCACATACATTTTATATGCCTAACTTTGATAAATATCACTAACCTAAAATACCTCAATTTATCAAAATTTCACCTTAAAACATACATCCTAAAAAAAAATGTTTACGGCATTTCGAATTCAAATATTGCAAGAGTCGAATTTTTATACTATATTAGCTAACTTATGCCCATTAAGATATTTGAGGTGCTGCCTAATATCAAAAATAAAATTTTGATACTAGGCCCCACATCAAGTGTCTTACTGGCCATATCAAAAAATGATCACCACAAATCCAAGCCCAATTTCACTTTTCATTTCCAAATTTCTCTCCACATATCTTGACATCCAATGTTTACAATTCTAATTTGGACAAAATTTCATTTTATACCTGAGAAAAAAACTTATTTCAACTTTAAATTTCGTTCAAAACTATTTACAAGAATAAGCCTGGTTTTGCGCAGTCCAAATTTGTGGAAATATATATATATTTTTAAAAAAAATCTGTGCCTGTTCAAGTGTAATTTTTTTTTTTAAAATTTTTGTATTTGCGCATATTTGGAATGCGCAAGTGTAAAATGATATTATATGTAAAAGGAGACGTATTTTCATAATAAGGTTTGATTGAGGCCTAAAGTCGAAATAAGTTTTTTTTCTCGGGCCTATAATGAAAATTTGTCCTAATTTAGTATGAGATCGTAAATGCGATATCAACTTCTTTTATTGAGCATGTGTCTTTTATATAATAAAAAACATAACCTGGCTGAAATCATAGTGTAGCTCCGCCACTGAATGTTGCTATTAGTATGATAAATAAGGAGACAAGTTAATGTTAGTTTTATACGATTTCAATAATCTATATGAAACATAAGCTCAAGTTGTCTACCATCCATTCCGGTGGTTAGGTGCACAAATTTGATTTGAGATGTCATAAGTTCAAAATTTGCGTAACGTGATCTAAGCTTGATGAAACTGTATTGACATGCATAATTTTGTTGAAAGGTATAATAAGCGAGTGTGATACTCAACCTCAAACCGACAACTCTTCTACAATTATAAAAGAATTAATAAATCTTTCAAGATGAATGTTTCCTACATTTTGAAAGTTTAACCATCAAAATATTTGGAAGGAACAATTTTGCATAATGTGTATATGATATTCCTTTATTCGTTTTTCCATGATCTCTAATCGCTGGTCATTTTTTTGGGTTCTGTACTTAAATGTGAGCATATTTATATATGTATAATTGAAGGTCCTACGTTATGCAACTTGTCTTGCCTATATATGTAGTAATGTATTTGGAAGTTAATACAAAGTTGGGGTCAAAACATGTGATCCACCAAGTTTTGCCTTCAATGTTTTCCTAATACTACAAAGCCAAACAAAGTTCTATTGATGTTTAGCCTATGGATATGCAAGTGGACCCATATAGTAACTTATTGTAGGCAAATAAATGCAATGTCGGATTTTGATAAATTCTACCTGTTGCTGTTAATTGTTGAACCCACATCCATTTTTTGTATGTACATACTAGTGTAGTGGTTAATGGATAAAATGTAATATTTTATAGAAGTTTTATTACAAATGGACAATTTAAAAGTAAATAACATGAATTGAAGTCAACAAATGTGAATATGATCGTTTATGTTTCTCTTTGGAGAAATTAGTAAACAAAATTGTTGTTATTCTGATTGAATTTTCCATTTCTTAGGATGCTGCATTACTAACAAAATATGTTTATTTTCCGCAATCACTTTCATTGTTTATTTATGCTATTACTTTCTATCAATTTTTTAAGCAACCAAATGCAATCTTATACTATAATTTCTATATTCATGTATCAACTTGCAGGTTGTCACTTTCTCCATTTCAAGTTGATGATTATAATTATGCAGTTATTTATCTTGATTGCAACTTACAAGTAACATTAACAACTTGATGATTATCCATTGAAGAAGCAATTCTCGATTTTTGTGATTATTTAATCTCGTATGGCTAATATATTATTTACCTCGAGTCTATGTGATGATAGATTTCTGATTAATTAAGGGGATCGTTCCATACAGTGATATATATACTGATAGAGTCATACACTGTGGTTTATCGCAGGTTTCAGCAAGCAAAACTAAAATTTATATGGTCCTCGAATATGTAAACGGAGGCGAATTATTTGACAAAATTGTAAGTTACTTGTGTATTGAAGAACTTACATAAAGCATATAATTTGGTAACTTATATGAAAGAATGTAAAAAGAAACTCATTTTGTAACTTCTCTGATAGGAGTCTAAAGGTAGATTAACAGAACGCGAAGGTCGAAGGCTTTTCCAACAATTGATTGATGCTATTAGCTATTGCCACAATAAAGGTGTCTACCACAGAGATTTGAAGGTATACAATACAAGTCTCTAATGAGGAAAAATATTGTTCTTCTTTCCTTACTGTTATTTCGAAGGTTAAAGTAGAAGCAGAATGATTTGTTTTTTTAAAGAGAATAGATAGATAGACTTAGCAATCAAATATACATACATACATACATATGTGTGTGTATTATTTCTTTGGTAATTAACAGTTAAGACTTGAGTGTGCTGCTTTATTGAATTAAAAATTCATTACAACTACTAATTGTTTTGACCTACTTTTGCAGCCTGAAAATCTTCTTCTTGATTCAAAAGGGGATATTAAGATATCAGATTTTGGTCTCAGTGCATTACCGCAGCATCTTGGTGTATGCTACAAACTTCTACCTACGTTTATGTAATTTTTTGAGCGCGTCATATTACCTTTGTTTTATTTCAGACGGATGGATTGCTGCACACAACTTGTGGGAGCCCTAATTATATTGCCCCTGAAGTAAGAATTCATTTCTCACTCAAACGTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAGAAAACTATTTATGTCTTTATCGTTAAACTTTGTTTTGTAATGTACTAGGTGCTGTCAAATAGAGGATATGATGGTGCTATGTCCGACATATGGTCTTGTGGAGTCATCCTATATGTCATACTTACAGGAGCTCTTCCATTTGATGATAGAAACATGGCTGTCCTATATCAAAAGGTATATGGCTAAGGAAATTTCAGAAGGTTTAATTACTTGTTTGCTTAACTTTTTTTTTTATATATAATTTTTTTTGGCATTTGGTATAGATTTTTCGAGGAGACTTCCAGATTCCTAAATGGCTATCTCGTGGAGCACATAACCTAATCCAAAGGATCCTTGATCCTAACCCTAACACTCGGATAAATGTGGATGGAATAAAAACAGATGAATGGTTCAAACAGAACTATGTTCCTGTTTCCCCATGTGACGACGACGATGATGGTGTTACAACTTTCAACAATGTTGATGTAACAATCAAAGAGGTAAGCTGATATCAAGTGATTGATTAGTCTTTTACGTTATGATATAATGTTTTGACTATCATATAACTGATTAATATTTAATTGTTTTTGAAGTCCATTGAGTCAGATGACATTAGGAATCAAAATTCTACCTTGATTAATGCCTTCCAACTAATTGGAATGTCCTCATTTCTGGATCTCTCTGGCTTTTTCGAAACGGAGGTAAAATGCTACAGAAACTGGAACCTTTGTGTATATGGAAACCATGAATGATTATTAACAATGAACAATGTGCGAAATGTAGACTGCCTCTGAAAGGAAGATCAGGTTCACCTCAAATCATTCCCCGAAAGACCTATTTGAGGAGATTGAGGGCATTGTCACTGAGATGGGATATCATGTTCATAGAGGACATGGCAAGGTATAATAACTTTCTGCTTAAAAACTAAGCATAACAAATTAATTTGTTAACATAATTCATTAGTGATAGATGAACAAGACTTTACTTGCAGTTGAAAGTTATGCAAAGGAATAATAACTCATATTGCCCAACTAGCCCAGGGTCCCTTTCAGTTGCTGCTGAGGTAAAACCAATTTTCTTTTCTTTGTTTCCACTTCTATAATAAAGTTTTATCCAACAATAATTAACTTATGTGTATACTACCTAAACAAACCATATATATGTTTTGAATTTGTATCAGCTGTTCGAACTCAATCCATCACTTTACGTCGTTGAGCTAAGGAAGTCTCATGGAGATTCCTCATTATACAGACAGGTATGCATTGCTTTTTTTAACCCCATAAAAATTCTTTAATGTATTTCAGAAACTCTTAATGTTATTCTGAAAATCATTATTGCTAACATCTATTTCAAATCAAATACTGCAGTTATGCACAAAACTGTCTGATGATTTAGGTGTATGTGAAAGCCATCAACTCTCAATACCGCACTCAATTATGCAGGATTTAAGTCATTTTGATGGAAATCTGTCTGTAATTGCTGCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273162.1	4.0e-198	CBL-interacting protein kinase 1-like
Swissprot	Q9LGV5.1	1.5e-181	OsCIPK01
trEMBL	A0A6I9S7H5	1.0e-192	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G17510.1	64.85	2e-160	562	CIPK1;SnRK3.16	CBL-interacting protein kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g540239	AT3G17510.1	441	151	2	37	477	4	440	64.85	2e-160	562
g540239	AT1G48260.1	426	149	4	46	471	4	422	63.38	3e-154	541
g540239	AT3G17510.2	362	123	2	116	477	3	360	64.92	6e-130	461

Ortholog group

Species	Genes
Allium cepa	g174721.t1; g216936.t1; g540239.t1; g63402.t1
Allium fistulosum	AfisC2G04611; AfisC5G03064; AfisC6G06879; AfisC6G06884
Allium sativum	Asa3G02576.1; Asa3G02577.1; Asa6G02222.1
Arabidopsis thaliana	AT1G48260.1; AT3G17510.1; AT3G17510.2
Oryza sativa	LOC_Os01g18800.1; LOC_Os01g18800.2; LOC_Os01g18800.3; LOC_Os01g18800.4; LOC_Os05g04550.1; LOC_Os07g44290.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	53	308	239.5	3.6e-71
PF03822.11	NAF	Domain	350	407	59.5	2.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018209	P	peptidyl-serine modification
GO:0018210	P	peptidyl-threonine modification
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0097305	P	response to alcohol
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07198	PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit	EC:2.7.11.11	Apelin signaling pathway	ko04371
			FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Tight junction	ko04530
			Insulin signaling pathway	ko04910
			Glucagon signaling pathway	ko04922
			Adipocytokine signaling pathway	ko04920
			Oxytocin signaling pathway	ko04921
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - multiple species	ko04213
			Circadian rhythm	ko04710
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network