result

Gene information

Detail information of g54887


Location
GeneChrStartEndStrand
g54887Scaffold_30289:HRSCAF_27780185642102710+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020270943.10.0e+00methyl-CpG-binding domain-containing protein 9-like
SwissprotQ9SGH2.10.0e+00Methyl-CpG-binding protein MBD9
trEMBLA0A5P1FNI30.0e+00MBD domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G01460.137.230.01235ATMBD9;MBD9methyl-CPG-binding domain 9

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag54886.t1; g54887.t1
Allium fistulosumAfisC4G05826
Allium sativumAsa5G04814.1
Arabidopsis thalianaAT3G01460.1
Oryza sativaLOC_Os02g09920.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain378330.72e-07
PF01429.16MBDDomain21125121.10.00016
PF00628.26PHDDomain1193124041.01.2e-10
PF15612.3WHIM1Family1274131441.18.4e-11

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0051276Pchromosome organization
GO:0000166Fnucleotide binding
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000792Cheterochromatin
GO:0008152Pmetabolic process
GO:0001763Pmorphogenesis of a branching structure
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0042393Fhistone binding
GO:0003824Fcatalytic activity
GO:0004402Fhistone acetyltransferase activity
GO:0004842Fubiquitin-protein transferase activity
GO:0005488Fbinding
GO:0016567Pprotein ubiquitination
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0005720Cnuclear heterochromatin
GO:0043231Cintracellular membrane-bounded organelle
GO:0005911Ccell-cell junction
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0006473Pprotein acetylation
GO:0006475Pinternal protein amino acid acetylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008080FN-acetyltransferase activity
GO:0008150Pbiological_process
GO:0008327Fmethyl-CpG binding
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009506Cplasmodesma
GO:0009628Presponse to abiotic stimulus
GO:0009648Pphotoperiodism
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010016Pshoot system morphogenesis
GO:0010216Pmaintenance of DNA methylation
GO:0010223Psecondary shoot formation
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010346Pshoot axis formation
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0016043Pcellular component organization
GO:0016407Facetyltransferase activity
GO:0016410FN-acyltransferase activity
GO:0016569Pcovalent chromatin modification
GO:0016573Phistone acetylation
GO:0016740Ftransferase activity
GO:0016746Ftransferase activity, transferring acyl groups
GO:0016747Ftransferase activity, transferring acyl groups other than amino-acyl groups
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0018393Pinternal peptidyl-lysine acetylation
GO:0018394Ppeptidyl-lysine acetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0019787Fubiquitin-like protein transferase activity
GO:0022414Preproductive process
GO:0030054Ccell junction
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031935Pregulation of chromatin silencing
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032446Pprotein modification by small protein conjugation
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033043Pregulation of organelle organization
GO:0033044Pregulation of chromosome organization
GO:0034212Fpeptide N-acetyltransferase activity
GO:0034641Pcellular nitrogen compound metabolic process
GO:0036094Fsmall molecule binding
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043543Pprotein acylation
GO:0043565Fsequence-specific DNA binding
GO:0043966Phistone H3 acetylation
GO:0043967Phistone H4 acetylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048367Pshoot system development
GO:0048573Pphotoperiodism, flowering
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0055044Csymplast
GO:0060255Pregulation of macromolecule metabolic process
GO:0060968Pregulation of gene silencing
GO:0061458Preproductive system development
GO:0061630Fubiquitin protein ligase activity
GO:0061659Fubiquitin-like protein ligase activity
GO:0061733Fpeptide-lysine-N-acetyltransferase activity
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070647Pprotein modification by small protein conjugation or removal
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0090308Pregulation of methylation-dependent chromatin silencing
GO:0097159Forganic cyclic compound binding
GO:1901265Fnucleoside phosphate binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902275Pregulation of chromatin organization
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140096
GO:1905393

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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