result

Gene information

Detail information of g54893

Location

Gene	Chr	Start	End	Strand
g54893	Scaffold_30289:HRSCAF_277801	175795	179678	+

Sequences

CDS

>g54893.t1
ATGAGCCTAAGCGGCAGGGTGGTCGCTCTAAGCAAGTACATTATCAAGGTGACCGCCAATTCAAACAAACTTGGATTTGGGTACAAAACCAAAATGAAAAAACAAAATATTAATCTCCTCTTCACATTCTTCATCTCACTTCTCTCATCTTCAACCTCCCAACAACCATACCAAAGAAACAACCAAGACAATTGCGATGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAAACTCTCCAACTCCGACCCCCAAACCTGCAGCTCCTTCTTATCATTCCGCTCCCAAACAAATTATCAAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAGACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCGACAATATAGTCCTGATTCCAACTACCTGCAACTGTAGCAACGGATTCTACCAACATAACTCTAATTACGTCGTCCATATTCAAGGCGAGACTTACTTTACTATCGCTAGTGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACGAGATCAAAAAAGGACAGATTTTCGCTGGAGATAATATACTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTCGGATTTAAATTCTTGTTAACTTACGTAGTCGCCACGAATGATATAATGTATGATATTTCCCAAAAGTTTGGTGCTGATTTAAAGACTGTTTTGGCTGCTAATGAGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGAACAGGTATCCGCTCCACCTCTATCTGCTCCGGGCCCCTCAGGTACTGCTGCAGCCACCCCACCGACATCTGGTGGTGCCTCTAGCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTTTTCTGGTCTTACTTGCTTTAGCAGGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACAGTGAATTGCCTATTGACATTAGAAGTAAAGCACGAGTGGTGAACGATTCGGCTAAGCATGGTGCTTCATCGAATTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAATGGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGCTCGGTGTACCAAGCAGTGATCAACAAAGACAAGGCTGCGGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCAACATAATTAGACTCTCGGGCTTTTGTGTGCATGAAGGAAACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCGGACTGGATTCATGGTAAAAAAGACTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACATACATAAGAACCTGAAGAGTAGTAATATATTGATGGATGGCGAGTTTAGAGGGAAGATATCGAATTTTGGATTGGCCAGAAGGTTTGAAGAGTATGAGGAAATGGCTCAGTTGACAAGGCATGTGCACGGGCTTATAACCCTGAAGCTCGACGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTACTTATCACAAGGACGGCGAGGATAAAGAAGAAATGTTGTGGGTGGAGATAGGGAAAGTGATGGATGGAGAAGATAAGAAGGGTTGTTTGAAAGGGTTTATGGATCCTTGTTTGGAAAATGAATATAGCTTGGATTTGGCTTTTGCAATGGCAGAGCTAGCCTGTAGATGCGTAAGTAAGGAAGCAGGTAGTAGACCTGCTATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTGTAATTCGACGTTGGAGTGGGATCCTTCAAATGTTGGGAATTCAGAATCAATGGCTCGTGGAAGTATAGGCTTTTGGCCCGAGCTCAGCCCAAACCAGCCCAGCTAA

Protein

Gene

>g54893.t1
ATGAGCCTAAGCGGCAGGGTGGTCGCTCTAAGCAAGTACATTATCAAGGTGACCGCCAAGTATATACCATTCTTCGACCAAGTGAAAAAGGGACGGAACTTCGAATGGGCTTAGGAATGAAAAACCATGTCTTCGAATAATTTTCAATGTGCTAAAATACGTACAAAATAAACTATAATCTTGACCGAAAGGATAATTTTCGGATGCGGATGTTTTCGTATCTACATCCATTTCCGCTTTTCTGAATATCTAATATTTATCCGCTTTTCGAAAATATGAGTCAGTTTAGTTCGGTTTGAAGTCCAAACTGTTTTCGCACCACATTAAATGGTTAGTTAAATTCAATAACCGCAATGCAATTTTTTAATGCGTTACAGTTTCAGTTTGGTTTAGTAATACTACGGTTCATAATTCTTGGTTCGGCTCGAATTGAATCCATATTACATTTATCTGAAAAACTTGAATAATTATTGGCACTGGTAAGAATATTAATGAAAAACTAAAGAATTCAAATAATAGACGCACATGTTCATAAATAAATGCTTAATAATTTAGTAATTTTGAGTAAAAACCACAAAATGTCATCAAAATCTTTGAATTGTACCAAATAGTCGGGTCTGTTATGATGCGTTTGGAACAATCATTCAAACCGCAACTGCAACGTCAAATCAATTGATTTTAGATATTTTATTTAATTAGAAAATATGATGCGGTTTACCGAACAATTCTAATGGTTTGGTACGGTATGTTTCCGTATGTTGATGCGGTTTATGTCAGCCTTATAATTTAATGCAATTTTCAATCTAATTTTGTCACAATTATACAAATTAAACAGAACTTTTGTAAATAACGTTTTTTAAGTTTCAAGATACACATACGCACAAAAAATAGCTCTATTTTTAGTTTATTGCTGAGTATACAGCAAACATTTGCTTTTGTGCAAAATAAATTAAAAAAAAAGTGCAGTTTTTATCATTTATACATGAGATTATGAGCAGACTCGGTTTTCCAAAAAAAAAAAGCAACAAAAAATATATGTTATCCATTGGAGTATTTTTAGTTTGAAAATGAGGAGGAATCGGTAAATTAACTATATTACACTGCAATAATAAATACTCACTAAAATATTTAACTTAATTTTTATATATACTTTGTTGTAAGTTGTTCAAATACCCCGTACTCTATCGTTTTATATAAAGAAAAATGAATGAAATTCATGTTTTTCTTCCTGTGTAAATTTCTTGGTCAAACAAATAAAGCGTCAAAAATATGTTAGTCTACTACTCTGTTTATATAATCAACTTCATCTTCTTCCTCGCAAATAAATATACCAAAACAAATCAACCAAAGTTCAAACAAACTTGGATTTGGGTACAAAACCAAAATGAAAAAACAAAATATTAATCTCCTCTTCACATTCTTCATCTCACTTCTCTCATCTTCAACCTCCCAACAACCATACCAAAGAAACAACCAAGACAATTGCGATGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAAACTCTCCAACTCCGACCCCCAAACCTGCAGCTCCTTCTTATCATTCCGCTCCCAAACAAATTATCAAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAGACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCGACAATATAGTCCTGATTCCAACTACCTGCAACTGTAGCAACGGATTCTACCAACATAACTCTAATTACGTCGTCCATATTCAAGGCGAGACTTACTTTACTATCGCTAGTGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACGAGATCAAAAAAGGACAGATTTTCGCTGGAGATAATATACTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTCGGATTTAAATTCTTGTTAACTTACGTAGTCGCCACGAATGATATAATGTATGATATTTCCCAAAAGTTTGGTGCTGATTTAAAGACTGTTTTGGCTGCTAATGAGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGAACAGGTATCCGCTCCACCTCTATCTGCTCCGGGCCCCTCAGGTACTGCTGCAGCCACCCCACCGACATCTGGTGGTGCCTCTAGCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTTTTCTGGTCTTACTTGCTTTAGCAGGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACAGTGAATTGCCTATTGACATTAGAAGTAAAGCACGAGTGGTGAACGATTCGGCTAAGCATGGTGCTTCATCGAATTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAATGGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGCTCGGTGTACCAAGCAGTGATCAACAAAGACAAGGCTGCGGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCAACATAATTAGACTCTCGGGCTTTTGTGTGCATGAAGGAAACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCGGACTGGATTCATGGTAAAAAAGACTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACATACATAAGAACCTGAAGAGTAGTAATATATTGATGGATGGCGAGTTTAGAGGGAAGATATCGAATTTTGGATTGGCCAGAAGGTTTGAAGAGTATGAGGAAATGGCTCAGTTGACAAGGCATGTGGTGGGTACACAGGGATACATGGCGCCTGAGTATATTTGGAGCACGGGCTTATAACCCTGAAGCTCGACGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTACTTATCACAAGGACGGCGAGGATAAAGAAGAAATGTTGTGGGTGGAGATAGGGAAAGTGATGGATGGAGAAGATAAGAAGGGTTGTTTGAAAGGGTTTATGGATCCTTGTTTGGAAAATGAATATAGCTTGGATTTGGCTTTTGCAATGGCAGAGCTAGCCTGTAGATGCGTAAGTAAGGAAGCAGGTAGTAGACCTGCTATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTGTAATTCGACGTTGGAGTGGGATCCTTCAAATGTTGGGAATTCAGAATCAATGGCTCGTGGAAGGTAGTATCTATTGTTGATGCATGTATGTATATGTATGTGCGTAATTGCTATATTTAGATTTACTGTAGTAGTTTGATCTAAGTATTTTGATTTGGGGTTTAGACATTGCTGCAAGAGATTGATGTAAGTGAAATTTAGCAATACATGAATCTTCATATTCGAAGTTAATTAGGCTCAAAGTAGTTAAAATTGTATTCATGTTGTGATAATTGACACTATATAAAAAAAAGAAAAATCTTCATTATTGTATAATTTAATTTAACTAAGGCACCCATTACTAGTTTATCCGTGCTAATAAACTTAAGCAATTTTTCAAAATTATCTTAATGAAGCTATGTATCCAAATGACACTTTATACCTCTTTGTAAGGAGATTAAATTATGAATTGAAGAAAGGACAGAATTATATTTAAAAGTTGTAGAAACATGATCATATGGAGCAAATGCGATTGTAAGGATGACTGAAATGAACCACTGCGTTTATTCTATTACTTTTTACTAATATTTTATCTATGAAAATTGCAGTATAGGCTTTTGGCCCGAGCTCAGCCCAAACCAGCCCAGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010913816.1	5.6e-171	protein LYK5-like
Swissprot	O22808.1	5.8e-133	LysM-containing receptor-like kinase 5
trEMBL	A0A6I9QT82	4.0e-171	protein LYK5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33580.1	44.53	4e-139	492	LYK5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g54893	AT2G33580.1	667	312	17	40	664	13	663	44.53	4e-139	492
g54893	AT2G23770.1	638	338	18	36	651	5	611	38.71	6e-103	372
g54893	AT3G21630.1	576	344	17	112	656	62	609	30.03	3e-59	226

Ortholog group

Species	Genes
Allium cepa	g352868.t1; g54893.t1; g9314.t1
Allium fistulosum	AfisC4G05827; AfisC4G05836; AfisS1139G00001
Allium sativum	Asa5G04820.1; Asa5G04821.1
Arabidopsis thaliana	AT2G33580.1
Oryza sativa	LOC_Os02g09960.1; LOC_Os06g41980.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	159	200	15.5	0.013
PF01476.17	LysM	Domain	221	264	26.1	6.2e-06
PF07714.14	Pkinase_Tyr	Domain	407	603	102.1	2.7e-29

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002376	P	immune system process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0046983	F	protein dimerization activity
GO:0008061	F	chitin binding
GO:0008144	F	drug binding
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0042493	P	response to drug
GO:0009719	P	response to endogenous stimulus
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010200	P	response to chitin
GO:0010243	P	response to organonitrogen compound
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019900	F	kinase binding
GO:0019901	F	protein kinase binding
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0035690	P	cellular response to drug
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0042221	P	response to chemical
GO:0042803	F	protein homodimerization activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071323	P	cellular response to chitin
GO:0071417	P	cellular response to organonitrogen compound
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0097367	F	carbohydrate derivative binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901698	P	response to nitrogen compound
GO:1901699	P	cellular response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network