result

Gene information

Detail information of g70270

Location

Gene	Chr	Start	End	Strand
g70270	Scaffold_34066:HRSCAF_333407	83589	86596	+

Sequences

CDS

Protein

Gene

>g70270.t1
ATGAGCAATAATAACAGTAATAATTGGTTGGGATTCTCTCTTTCACCTCAAATTAGTATGGATCATGCATCTTCTGAATCAAATCACCATGGATTATGCTATGATCAAGGAGAAAATGCAGAGCTTTACTCACAGTTATCCCTCATGCCTTTGAAATCAGATGGCTCTCTTTGCTTAGTGGAAGCTCTAACAAGATCACAACAAAACCATGGTTTGTTTCTTTAAACTTTTAAGTACATATATTGTTGCCTTGTTTAATATGTACTTAGCTTACATATGCATTATTCATATTTTGACTTTTAGTTCAAGGGATTGCTCCATCTCCTTCTCCAAAACTAGAAGATTTTCTAGGTGGTGGTCCAAATAATAACATTGGGGTCCATAATAACTACGAGAACAATGACAAAGAAGTAGCAAATAATATGTACTACTACCAACAACAACAACAACAAGAATATAGGAATAGTAATGCATATTATCAGCCTATACACGACGAAATATATCATAACTTTTATAGTGAGATTGATGGAAGCTCAATCGGTGGACTTGGTTATGGTGATTTGCATTCTTTGAGCTTGTCTATGAGTCCTGGTTCTAAACCGTGCTCCGTTACACTACCACAAAATTATAGTGTATCAAATGTTGGAGTTAATAACAATGATGGTATGGCTTTGGATGTTGTTGCAAATAAGAAGAGAGGTAGTGGAAAAGGTGGAGCAAAGCAACCGATTCATAGAAAATCGATCGATACATTTGGGCAAAGAACTTCTCAATATAGAGGTGTCACAAGGCAAGAACTTAGAAATGTGACGTTTTACAGTATTAGTGTAATATAATGAGCTCAAAATGATAAATAGTATGTATGATTTAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTTTGGGATAATAGTTGCAAGAAGGAAGGACAAACTAGAAAAGGAAGGCAAGGTTAGTAAGTAGATCATCATAGATGAATATCTTGGTTTTTATTCATTTATTTTGAGTGAATTACTTGCATTGTATGCTATATTTGACGTCTCTTAATTTTCACATGTGTCTGCTTTGGGGAAACAATGATGCAGTTTATCTTGGTAAACACATACTTTCATCAATGGTCATTATCTTATTTTACGAATCAATAAAGTTTATCTAATCTTTTCGTTAATGTATCATTTAGGGGGTTATGATATGGAAGATAAGGCAGCAAGATCCTATGATTTAGCTGCATTGAAGTATTGGGGGCCTTCCACTCATATTAACTTTCCAGTATGGTTTTATGTTTTGGACATTCTGCCTTTAATCTTCGTATTTACACTTACTAACCTACAATGACATTATAGTTGGAAAATTATCAAGAAGAACTCGAAGAAATGAAGAGTATGAGTAGGCAGGAATACGTTGCACATTTGCGAAGGTAATTAGTTAACTAAAGATAATGTCCATTTCACATTATTATGACAATGATATCCTTTTCTTAACTAACTAGCTATTTGATGTTTACAACTCTTGTAGAAATAGCAGTGGATTTTCTCGAGGGGCCTCAATGTACCGAGGAGTAACAAGGTTTTTTTATTCTATTAATATTGATGCTTAAAGTACCACTTAAAACTTTGGCTCCATATATAAATTTTTCTTTCACATATATTTACTTTGTTCATATGATATATTAGGCATCATCAACATGGAAGATGGCAAGCTAGAATTGGAAGAGTTGCTGGAAACAAAGATCTCTACCTTGGAACTTTCAGTAATTTTCTGAATACTTCACTAGTCATATTATTCTAAGTTTCAAACTTAAAACGCTGAAGTCAAATTAATGACAGTTTGCCAGTTAAAATAAAAGAGCATTTCATTAGTATATTCAGAACATTCCGGTTAAACCATTTGCTTTATTTCATGATTCGCACTTTGATCACACTATACCGAATTTCAAAATATAGATAGCACTTTTTCTTCCTTTTGTACCCTGCAAAAATTCAAATTCTTTCCTTTAAGTAAAGCTGTATTCTTTGCTGGTGGTAAAATTCATTGGTTGACAGATTCAACTCTTAAAACCACCAGTACAAAGTGCATAGAATATTTAGTACCACTTTGAAATCAATAAAAAACACTTTAAAGTTTCTTGATTATCAAATGCCTGGTATAGCATGTTAATTGTTAATTGAGTTACAACAAAGGTTATAACTATAGAACTGCGTACATTTTCACTTTAAGGCATAGTTTGTTTCCCATTTGAAAAATGCTTAACGACAACAAACACTGATTGTAACAAGATATTTATAAATAACTATTAATTATACAGCAAAAGGAGTCTGCATTATTAGCTTATATCTGTGCCAAAACGAAGATTGTACAATTTTAAACCCTATCAAAACCCTGAATTCAAAATTCAATCAGTAGATTTTTGTTCAAGATACTAATAGTAAACAAAACATTTAAAAATCAAAACCAAACAGCATTCAACAATTGCTTCTTTCTCGAAACAAATACAATTCTTGAACATGTTTTTTATTTATTTATTTAAAGGCACTCAAGAAGAAGCAGCAGAAGCCTACGATGTGGCAGCAATAAAATTCAGAGGAGCAAGCGCAGTTACAAACTTCGATATAACAAAATATGACGTAGAGAAGATAATGGCAAGCAACAGTCTTCTTTCAGGAGAACAGGCTCGTAAATCTAAAGCTGCTCCTCCTATTCAGAATACAAATGTTGAAAACAACAATAGCAATAGCAATAGCAATGATATTGTTCTTTACGAACCTCAAGATGGAACATTTGAACAGAACTTACCGGTCTCTGTAGCATTTAATGGGCTGAACGGTGTGCATATTTCAGAGTCATCTTCGCATGTAACTAGCTTGAATAGCTCGAGAGAGGAGAGCCCTGACCCCAAGTTTTGTGTTAGTGCAAGTCCACTGGCTTCTTGGATGTCTACGGATCAGATAAGGCCTGTTATCTCTATGTCTCATATGCCCGTTTTCGCTGCATGGAGTGATGTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936186.1	1.4e-150	AP2-like ethylene-responsive transcription factor CRL5
Swissprot	Q38914.2	2.6e-112	Protein OVULE MUTANT
trEMBL	A0A8B9AA85	7.9e-151	AP2-like ethylene-responsive transcription factor CRL5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37750.1	49.33	2e-126	449	ANT;CKC;CKC1;DRG	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g70270	AT4G37750.1	525	190	10	31	517	68	554	49.33	2e-126	449
g70270	AT1G72570.1	252	70	3	160	411	164	407	69.05	4e-101	365
g70270	AT1G51190.1	429	160	11	5	420	2	384	48.95	8e-98	354

Ortholog group

Species	Genes
Allium cepa	g200100.t1; g213847.t1; g70270.t1
Allium fistulosum	AfisC5G00393; AfisC8G04796
Allium sativum	Asa0G02777.1; Asa1G01000.1; Asa1G04394.1; Asa3G00663.1; Asa3G03102.1; Asa4G04187.1; Asa5G00202.1; Asa6G00581.1; Asa6G06767.1; Asa7G03684.1
Arabidopsis thaliana	AT4G37750.1
Oryza sativa	LOC_Os03g12950.1; LOC_Os03g56050.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	226	285	44.3	1.4e-11
PF00847.17	AP2	Domain	330	379	39.4	4.7e-10

Gene Ontology

Accession	Ontology	Name
GO:0006790	P	sulfur compound metabolic process
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006082	P	organic acid metabolic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006807	P	nitrogen compound metabolic process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010073	P	meristem maintenance
GO:0010074	P	maintenance of meristem identity
GO:0010468	P	regulation of gene expression
GO:0010492	P	maintenance of shoot apical meristem identity
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016143	P	S-glycoside metabolic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019748	P	secondary metabolic process
GO:0019757	P	glycosinolate metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0019827	P	stem cell population maintenance
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042127	P	regulation of cell proliferation
GO:0043436	P	oxoacid metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044281	P	small molecule metabolic process
GO:0048507	P	meristem development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0098727	P	maintenance of cell number
GO:1901135	P	carbohydrate derivative metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901657	P	glycosyl compound metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network