result

Gene information

Detail information of g73457


Location
GeneChrStartEndStrand
g73457Scaffold_34450:HRSCAF_341649187269187691+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAAB53260.12.5e-17zinc-finger protein-1
SwissprotQ9SSW1.12.5e-17Zinc-finger protein 1
trEMBLA0A3P6B2M11.8e-17(field mustard) hypothetical protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G49930.147.481e-23 105C2H2 and C2HC zinc fingers superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag18990.t1; g213735.t1; g320084.t1; g356913.t1; g360640.t1; g365769.t1; g387689.t1; g454669.t1; g73457.t1
Allium fistulosumAfisC1G01046; AfisC1G02314; AfisC1G02322; AfisC1G06837; AfisC2G00071; AfisC2G05655; AfisC3G00374; AfisC3G00818; AfisC3G00819; AfisC3G05177; AfisC3G08231; AfisC4G04438; AfisC6G05965; AfisC8G03059
Allium sativumAsa3G02116.1; Asa7G01770.1; Asa7G01772.1; Asa7G01773.1; Asa7G01774.1; Asa7G01775.1; Asa7G01778.1; Asa7G01786.1; Asa7G01787.1; Asa7G01819.1; Asa7G02141.1; Asa7G02142.1; Asa7G02143.1; Asa7G02475.1; Asa7G07098.1; Asa7G07564.1
Arabidopsis thalianaAT1G27730.1; AT3G19580.1; AT3G19580.2; AT3G49930.1; AT5G04340.1; AT5G67450.1
Oryza sativaLOC_Os03g55540.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13912.3zf-C2H2_6Domain598347.51.1e-12
PF13912.3zf-C2H2_6Domain12914016.10.0073

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006972Phyperosmotic response
GO:0008150Pbiological_process
GO:0009266Presponse to temperature stimulus
GO:0042493Presponse to drug
GO:0009409Presponse to cold
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0010033Presponse to organic substance
GO:0010200Presponse to chitin
GO:0010243Presponse to organonitrogen compound
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0042221Presponse to chemical
GO:0042538Phyperosmotic salinity response
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.