result

Gene information

Detail information of g76697

Location

Gene	Chr	Start	End	Strand
g76697	CHR1	152242410	152243294	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_024994945.1	4.7e-66	transcription factor MAMYB
Swissprot	Q9ASQ2.1	6.4e-44	Membrane-anchored MYB
trEMBL	A0A1U8B1W3	2.1e-63	dnaJ homolog subfamily C member 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G45420.1	44.69	5e-49	191	maMYB	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g76697	AT5G45420.1	311	149	7	1	294	1	305	44.69	5e-49	191
g76697	AT3G11450.1	179	86	3	158	294	466	644	28.49	1e-13	74.3
g76697	AT5G06110.2	189	92	2	153	294	472	660	26.46	2e-13	73.6

Ortholog group

Species	Genes
Allium cepa	g143920.t1; g20511.t1; g76697.t1; g84443.t1
Allium fistulosum	AfisC1G04036; AfisC2G00126; AfisC2G00518; AfisC2G02763; AfisC5G04906; AfisC8G05633
Allium sativum	Asa6G05339.1; Asa7G04830.1; Asa7G05211.1; Asa8G05858.1
Arabidopsis thaliana	AT5G45420.1
Oryza sativa	LOC_Os08g06240.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	240	282	28.6	1e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0016049	P	cell growth
GO:0003674	F	molecular_function
GO:0003682	F	chromatin binding
GO:0042393	F	histone binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005783	C	endoplasmic reticulum
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0040007	P	growth
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010015	P	root morphogenesis
GO:0010053	P	root epidermal cell differentiation
GO:0010054	P	trichoblast differentiation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0012505	C	endomembrane system
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0021700	P	developmental maturation
GO:0022622	P	root system development
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048468	P	cell development
GO:0048469	P	cell maturation
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048588	P	developmental cell growth
GO:0048589	P	developmental growth
GO:0048731	P	system development
GO:0048764	P	trichoblast maturation
GO:0048765	P	root hair cell differentiation
GO:0048767	P	root hair elongation
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060560	P	developmental growth involved in morphogenesis
GO:0061649	F	ubiquitinated histone binding
GO:0065007	P	biological regulation
GO:0071695	P	anatomical structure maturation
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:0080147	P	root hair cell development
GO:0090558	P	plant epidermis development
GO:0090627	P	plant epidermal cell differentiation
GO:0099402	P	plant organ development
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140030
GO:0140035
GO:0140036
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network