result

Gene information

Detail information of g81639

Location

Gene	Chr	Start	End	Strand
g81639	Scaffold_35658:HRSCAF_362205	164793	166310	-

Sequences

CDS

>g81639.t1
ATGGCATACATGTGCGCGGATAGCGGCAATCTCATGGCCATTGCTCAGCAGCTCATTCAGCAAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACGAATCCAGGCTCTCCAAAACGCACCTTCCCAACAGCACCCACTTTCCCACCCTGCCTTCACCGCCGGTCCCCACTCCTCCTTCCTCGACTTCCATGACGACGACGTCAGCTGCTGGATGGACTCCTCCTTCTCCGACCTCCTGCCCGTCGACTCCTGGCACTTCCCCGCTGAGCCCTCCGATCTCAACTCGGTCGTCTTCTCCGACTCCGTCAACCTCGCCGCCGCCGTCCCCACCTCCGTCCCTGACCACTCACTTCTCTTACCCGACTCCTTCAACAGCAACGACAACAGCAACCAATCTAATTCCGTGATAAAACGTCTCCTCGACTGTGCAAACATCATCGACTCCGATCCCTTTCAGGCCGAGAAATCACTCTCCAAAATCAAGGAACTATCCTCCGATCTGGGAGATCCAACGGAGCGAGTAGCGTTCTATTTCCACGAAGCACTGACTCAACGTTTGAACAGAAGCTGCTCGTTCTCCTCCACTGATTACTTGCCTCCTGAGGATTTCACTTTATGTTACAAGGTGTTAAACGATGCATGCCCGTACTCAAAATTCACTCACTTAACTGCAAATCAAGCAATTCTTGAAGCTACAGAAACATCAAGTAGGATCCATATCATTGATTTTGGGATTGTTCAAGGGGTTCAGTGGGCCGCCTTACTGCAGGCATTGGCAACCCGGCCTACAGGAAAGCCCGATAAAGTCCGAATATCAGGCATCCCTGCTGCTGCTTTTGGTGAATCGCCTGAAACGTCATTAGCTGCAACATCAGCTAGGCTTAAAAATTTCGCACAGCTACTTGATCTTGATTTCGAGTTTGATTCTATATTAACACCCGTTAGTGATATAACGGAATCCACATTCCGTGTAGAAGAGAACGAGTCCCTTACAGTTAATTTCATGCTTCAACTCTACACTTACTTAGAAGATCCTCCACTTCTTGTTGAGAGAATTCTAAGAATTGCAAAATCTTTGAAGCCTAGTGTTGTGACCTTAGGTGAATATGAAGTGAACTTGAACAAGGTAGGATTTTCTGCAAGGTTTAAGAATGCATTGGAGTATTACTTAACTGTTTTCGAGTCTATTGAACCGGGTTTGGATCGAGAGTCGATGGATCGGGTTCGGGTTGAAAGGTTGTTGCTTGGTAATAGGATTTTGAAAGTGGTGGGGCCCGAGAATGATAAGAGGAAGAGGGAGAGAATGGAGGAAAGGGAGAATTGGAAGATGATGATGAAAGGGTGTGGATTTGAGACATTGCCATTGAGTAATTATGCTATAAGTCAAGCTAAGCTTCTGCTTTGGATATATAATTACAGCTCGAGATTTACGGTTGTGGATTCTTTAACGGGGTTCCTCTCTTTGTCGTGGGAGGAGAGGCCATTGCTAACAGTTTCCTCGTGGCGTTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	THU62126.1	1.0e-132	hypothetical protein C4D60_Mb01t01860
Swissprot	Q9FL03.1	2.3e-126	GRAS family protein 32
trEMBL	A0A834ZHC9	5.5e-133	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G66770.1	60.60	8e-131	464		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g81639	AT5G66770.1	368	145	0	138	505	217	584	60.60	8e-131	464
g81639	AT3G50650.1	372	158	3	138	505	177	542	54.84	2e-111	399
g81639	AT3G03450.1	394	217	13	130	505	172	545	35.28	2e-55	213

Ortholog group

Species	Genes
Allium cepa	g81636.t1; g81639.t1
Allium fistulosum	AfisC5G00464
Allium sativum	Asa6G06728.1
Arabidopsis thaliana	AT3G50650.1; AT5G66770.1
Oryza sativa	LOC_Os03g51330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	139	505	352.9	1.7e-105

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network