result

Gene information

Detail information of g86545

Location

Gene	Chr	Start	End	Strand
g86545	CHR5	241156742	241158703	-

Sequences

CDS

>g86545.t1
ATGGCAGGTTTACTCAATATTCTGTCCTGGCCTTATCTTTCAGTGATTGCAGATTTGCTAAAGTTATTTTTTTTTTGTTTCATTCAAAGTGCGTGTGGCGACCTTGATCATATTCAACCTTCTTCATCATCACAAGCCATGGACAACAATAACATCAATCATAATCTTATTGATGAAAACAATGATCCTTTTGCAAATACCCTCCTCGAATTAGCAGCAAACAATGATCTTGACGATTTTAAACAGTCAATAGATCAAAATCCCTCAACTATCAACACCGTTGGATTATGGTATGGAAGAAAAAAAGGCTGTAGCCAAATGGTATTGCATCATAGAACACCCTTAATGGTAGCTGCTACATACGGTAGTATTGATGTATTGAAAACTATACTATCAACATCAGAAATCGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCCGTTAATGTAATCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCAGACTCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAAGTGGTCCATGTAAAAACAGATTTAGAAGAGCTTTTAGGCAAAACTCATGCTAATGGGAGTGTTAACTCGAGATCCTTGCCTATGATTTCAACATCAGTTTCTGCTCCAGAGAAGAAAGAGTATCCTATAGACCCTTCCTTACCCGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTATTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCACCCAGGCGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGTTGCGTTCCATGTCCCGACTTTCGAAAAGGGGCATGTAGAAGAGGAGATCTGTGCGAGTACGCGCATGGGGTGTTTGAGTCCTGGCTTCACCCTGCTCAGTATCGCACCAGACTGTGTAAAGATGGCACTGACTGTGATCGTAGGGTATGCTTTTTTGCCCATACTAACGAAGAGCTTCGCCCTCTTTATGTGTCTACTGGATCTGCTGTTCCTTCTCCTTACATGCCAGGGTCACCATTGTCTTTCTCTCCTCCCATGTCTCCGGTAGCCGCTGTACATTTGTCTGGAAACAACTTTCTGTCAAGTAGGCTAAGGTCATCTTTGAGTGCACGTGACGCGCATGTAGATGACTATTCCATGATCCAAGAGTTTGAATCTCGATCGAGCACACCAAGGTCTATGAATCCGATTCCATCGAATTTGGATGAGTTATTCTATTCTGAACACTCGTCATCTCCAAGATATTCACTTTCTCCAATCAATACTAATATGCATGGGCGTAATGCACTCTTGCAAGCTTCTCTTGGTATTTCATCACCTGGAAGAATGTCTCCTAGGAATATGGAGCCTATTACTCCTATGAACTCTAGATTGGCTGCAATTGCTCTAAGAGAGAGAAAACTAAATAGATTACAAAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGAACACTTCTATGAGCTCACCATGGTCAAAATTTGGTTCAGGTTCTAGCACACTGGATTGGGGAGTCAGTGGTGAAGAGCCTGGTCAACTTAAGAGGTCTTCTTCATTTGAAATGAATCTAAATGGTGAAGAGCCTGATCTCTCTTGGGTTCAATCATTGGTCAAAGAACCATCTTCTGAAAAAGTTGCTAGTAATGAACTTGGCGATGGTGATAATGATCTGGATGTTGCTTTAGGTGCTTATTTGGAGAAGATGAAGCTGAATCATATGGTAGCTTAG

Protein

Gene

>g86545.t1
ATGGCAGGTTTACTCAATATTCTGTCCTGGCCTTATCTTTCAGTGATTGCAGATTTGCTAAAGTAATGCAATAATTATCCAAATAATCAAAGTTTAAATATAATTCTTAATCTGTCTTGAGTTTTATTCAGTGTGTTAATTGTGTATGTAGGTCTCCATATTTTATCCAATATTTTTACATTATTTTCTAGGTTATTTTTTTTTTGTTTCATTCAAAGTGCGTGTGGCGACCTTGATCATATTCAACCTTCTTCATCATCACAAGCCATGGACAACAATAACATCAATCATAATCTTATTGATGAAAACAATGATCCTTTTGCAAATACCCTCCTCGAATTAGCAGCAAACAATGATCTTGACGATTTTAAACAGTCAATAGATCAAAATCCCTCAACTATCAACACCGTTGGATTATGGTATGGAAGAAAAAAAGGCTGTAGCCAAATGGTATTGCATCATAGAACACCCTTAATGGTAGCTGCTACATACGGTAGTATTGATGTATTGAAAACTATACTATCAACATCAGAAATCGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCCGTTAATGTAATCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCAGACTCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAAGTGGTCCATGTAAAAACAGATTTAGAAGAGCTTTTAGGCAAAACTCATGCTAATGGGAGTGTTAACTCGAGATCCTTGCCTATGATTTCAACATCAGTTTCTGCTCCAGAGAAGAAAGAGTATCCTATAGACCCTTCCTTACCCGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTATTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCACCCAGGCGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGTTGCGTTCCATGTCCCGACTTTCGAAAAGGGGCATGTAGAAGAGGAGATCTGTGCGAGTACGCGCATGGGGTGTTTGAGTCCTGGCTTCACCCTGCTCAGTATCGCACCAGACTGTGTAAAGATGGCACTGACTGTGATCGTAGGGTATGCTTTTTTGCCCATACTAACGAAGAGCTTCGCCCTCTTTATGTGTCTACTGGATCTGCTGTTCCTTCTCCTTACATGCCAGGGTCACCATTGTCTTTCTCTCCTCCCATGTCTCCGGTAGCCGCTGTACATTTGTCTGGAAACAACTTTCTGTCAAGTAGGCTAAGGTCATCTTTGAGTGCACGTGACGCGCATGTAGATGACTATTCCATGATCCAAGAGTTTGAATCTCGATCGAGCACACCAAGGTCTATGAATCCGATTCCATCGAATTTGGATGAGTTATTCTATTCTGAACACTCGTCATCTCCAAGATATTCACTTTCTCCAATCAATACTAATATGCATGGGCGTAATGCACTCTTGCAAGCTTCTCTTGGTATTTCATCACCTGGAAGAATGTCTCCTAGGAATATGGAGCCTATTACTCCTATGAACTCTAGATTGGCTGCAATTGCTCTAAGAGAGAGAAAACTAAATAGATTACAAAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGAACACTTCTATGAGCTCACCATGGTCAAAATTTGGTTCAGGTTCTAGCACACTGGATTGGGGAGTCAGTGGTGAAGAGCCTGGTCAACTTAAGAGGTCTTCTTCATTTGAAATGAATCTAAATGGTGAAGAGCCTGATCTCTCTTGGGTTCAATCATTGGTCAAAGAACCATCTTCTGAAAAAGTTGCTAGTAATGAACTTGGCGATGGTGATAATGATCTGGATGTTGCTTTAGGTGCTTATTTGGAGAAGATGAAGCTGAATCATATGGTAGCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257981.1	1.1e-194	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	3.0e-168	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A835DBS9	3.4e-185	C3H1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	49.14	2e-166	583	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g86545	AT2G41900.1	698	208	19	47	610	29	713	49.14	2e-166	583
g86545	AT5G12850.1	642	195	18	66	579	40	661	46.57	2e-144	509
g86545	AT5G58620.1	602	254	14	57	581	3	591	42.86	3e-118	422

Ortholog group

Species	Genes
Allium cepa	g177487.t1; g86545.t1
Allium fistulosum	AfisC2G05814; AfisC5G00332
Allium sativum	Asa6G03372.1; Asa6G06625.1
Arabidopsis thaliana	AT2G41900.1
Oryza sativa	LOC_Os03g49170.1; LOC_Os03g49170.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	106	179	42.8	5.3e-11
PF00642.21	zf-CCCH	Family	298	318	25.2	1e-05

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network