result

Gene information

Detail information of g97046

Location

Gene	Chr	Start	End	Strand
g97046	Scaffold_37765:HRSCAF_409838	11900	17543	-

Sequences

CDS

Protein

Gene

>g97046.t1
ATGGATCAGTGGAACTCCTCAAGGTTTGTTTCATAAATTCGTTTGATTAATTAGTGCGGTTATATATATAGAATTGGAATTTTGATGCTACTTTTCTAGTTATTAACTAGTTTGGTTTATGCATACTAATTTACACAGTTAAATATAGCCAATTGATCATTCCTAAATCGACAAATAGTTGTATCAATCGAAGATATATTGTTTAGAGGGTATTTTTTCACAGGTTTGAATAATCAATGGAGTTTTATAGCTGTAGATAATTCACTCTAATTTGTTTTAATCTGTTCAGTCGGCACATGTCAAAAATAATGTTTTTGCATGTTATTTGGTTGGAAACAAAATACCAAAATAATTTTAATAATATGTTGATTAAACTTAACGTTGTGAATACTGAAATTTATTTATCTTTTATCTATGTAGAGGTATAAAAATTTGAGTTGGTATTTGGAATATTCTTACTCATGTCGCACACTTTTTGTGATACTGGAGAATGTTTTAATCAGGGTTATAATACCGCTCAAGGCACAAATAACTTGTTGTCTTTCAAGAATGTTTTCCGTTTCGGTAATCACTCAGGGTTGATCAAAAACTTTCTCCTAGAATGCAGTGGAAATTATCCGTGCAAGTTGTGATTGCTTGCATAGATTAGAAGAACACTTGAAAATATCCTGATGCTGCTTTTTTTAGTTCGAAAGCAGACAAAAATTATTGATTTCAGAAATACAGTATGGTGTTTATATAAGAAGCAGAGCGACTGTTGGTGATGAATATTGAAATCAACGGACACCTCTTGGCCCAACAGATATAATCGTTGCCGTTTAAATTCAAATTCAAATTCAAACGAGATATACAGTTTTGAATGGGGCGGTGCTCCCTGGACCTTCACGACCTGATCAGCAAACTGCCGTCAGCGGGGGGCGGTGCTCCCGTGACTCCACCTAGGGAGTTGCCACCTCCCTCTGTAGTAGTAAACATTATTGAAGAAATTTTACGATAACCTTCCACCAAAGGACTTTGAGAAATGAGGGCCTAAATATTTGAAGTTATAAGCTTTATCTGTTCTTTCTTTCAAATTTTAGTATTTCCTAAGAGGAATTTCACTAGAAGGACAAACTTTACAGTCCAATTAGTTTTTAGGACACACGTCACAGAAATTAATTTCAAGGCCAAAGTTAGTAGAATAATTACTTTTAAGGACAAAGTCAGCAGTCTAATTACTTTTAAGGACATAATTTCCTAGGTTTTTAGGCCTTAGAAATTAATTATTTTTCATTTTGTCCTTAAAAGTAATTATTTCAGTTATGTGTCATAAAACTAATTGCACTTGCTAAGAGGCCCTTGTGGGCTTATTTCCACATTTTTTCCTAACTTATACCACCACTAGCATCAATATGTTGTGTGCAAAAAAGATAATTTTTGTACTGGTATAAGCAGCCAGAGGACACACTATTTAATAATAAAAAGAATTGAATGGATATGATTTGCACGGTGTCTTTTTGAAATTTCCGAAAATACCCTTCCATTCATCAATGGAATCTCACCAGTGGTTTGCAACCTTAACAATCATTCCCTTTTCGGTTAGTCGACATAATTTCACTATTAATTTGCACCACCACAAAAGTGCTTGAAATAAATTGTTGTGATCACCAAAGCTTTTGCATTTATAGCACACACTCGTCAATTAATTCTTTTTATCGAATAAAAAAAGTATACTCATCTAGCTATTGGATGCACGTACGTGCAATTTATACTTATGTATAAAATTTGTTTTCAATGGTTTGTCACCTTCACCAATTTCAACAATGTGCCTGTGAAGTTTTCATTGCCCGTTATAACTTGGAAATCGGTGATTAATGCAGCTAAGCATAGTTTCTTTATGAATGTATATATGTTAAGCTTTGCAAGTGTCGTCGTACCATGTATCATGTAAAACAGATGGCAAAAAATCAAATATTTTTAGAAATTGTTTGATAACCTTTTTGATAGACCAAGGTCCAGCAGCATGTATGCATTCATTTATTGTATGAATTCTTCTTGACATTAATGTTTTGCTTACCTTTATCAGTCAAATTATAGAACATGATTCGATGGATCCGGTTGCTGCACGGAAAAGTCAGAAAGCTGACCGCGAAAAGTGAGGAGAGATCGACTGAATGAACAATTTATCGAGTTAGGAAAAGCGTAGGTAAATTTTATGTTTTGAAAATTTTGTGTCCTTTGATTGTGAAAGAGCAACATAATTTCCGTTGTTGTGAATTTAGTTTGTCTAGTATAATGCATGCGCTGCTATCAATTTTTCTGAATATGGTAGATGTTTATATTACTGGAGCCTTAAAATGACTGTTCAAATTTCAATTTGAATTGTTTTTGTGGTTGATACTACTTGATTACCATAAGCAAGTTTCTAGTGAAGTATACCAATGTTTCTGCCTCTTTGCGATCATCATTTGTTCTGAATTTTGGGAAATGCATGCTTTAGTTTGGGATAACTTCTTATTTAATATCAGAGGGGGAAGAAAATTTTCTAAGCCGAGTTAAGTGATTATTTGTTAATCTCCAGTATGATGTCACCATGACCATTCAACATGTTAGTGGCATGCATTGAGTTCTCTACCATAATGGTTTTGCAAGTACGATTTTTATAGTGCTTTTGTTTAAGAATAGGTTGGTAACTCTAAAACCAAACTGTAAGCTTTGATATAAAGTTGCTATAACTTTGATGTCATGTTTCTTTGGTTTCAACACAGATTATTCGAAATGTCCTTCAATTTTTAACTAGAAAATATACCTTAACACATTAGATCGGCTTAAATATCACAAACGAGTTTAGGAGAGTTTGAATCCAAACCACTATAAAATTAATTACATCTTTATTATTATTGTTATTTTTCTATTTCATTTCCTCTTATGTTTTACCTGTCTTCAGCATCATCACACATTTTTTAAATATTCATTCATCGTAATTTTGTTTTACATATATACATTAGGTATTCAACTTATTTTACTCTTTACCTTCGTATAGATAATTATATATCATCAAAACTAGTTATGATTAGTCGAGGTTTATTTCTTATATCATTAAAATAACTTTGAACTAGATTTGTTTCTTATGTCATAATTTTGTAAGTAAAAATTAATATATACTTAATGTAGAATTTTGCTGTGATTATTTTAGTTTGTATGCTTTTATAAGATTTCCAAATTTGACTTTTGCATAACTAGAACTGGTTTTTGTAAAGTTAGCTTTTAAATTATTTATTACATAGAAAAATATTTTCTATGCATATTGCAAGTAAGAATTATCCTTCAAAGAATGCTTTTGAACACTTCCCAAGGTTAGCAACTGTTATTGCATAAATGGAACTGAAATGTAAAAATAGAACCTTTTTTATGTTTTGCATTGTTAAAGTCCTTAAATCAATTCTGGCTACAATTTTCGATTGTACCAAAAAAGATTATTAAATTAAAACCCATCGATATAATATGTGAAATCAGATTTTGATTATTTCAGCTCAATATTCATTTTATCCTTGAATATGTTTTCATCAACATATGGATCGTACATATCAGTGTACTATTGTAATAATTTGTGCTGTCGAAATCAATATAGAGAAGTCAAAATCAAATATCCATAATGCACTCCAAAGAAGGACCCACTTTTTTTATCTGGCATGGACTTAATATTAATATTCAATACCATAAAAGTCATCAATGACCAGAAAAGAACAAACCAGAATTAAATGAAAGATTAGTATTCTCATAATTCCGAATTTGAGTTGCCCAATTATCCTCTATGTTTATTCAGTTTCTAAAAATAGTTCATAATGATGGCACTCAGCAAACTATTCAATGGTTATGTCGTTATATGCCTCCAAGTGATTAAGATCCATGCAACAATTTACCTCTACGATGTTTTATAATTAAAATCAGAACCCATGTGGTAATTTTTAAAAATGTCAAGACTTGTTTTAGAAGGTTCGGTAGCTGATGCATGTTGTGCTGAACCTATTTCACATGATCATTCAAACTCATGGTCATGTATTCTATCCGTGGATGCACAGACGCATGTGTGCACATACATTTGTCTGTCTTTGTGCATTAATTTATAAAGAACATTAAACGTGATATTTAATAAGAAAAAAATATTTTCCTGAAGCATGATTTTTTTTTTCTGAATTCAGTTTACGTGAGGGGATGAGGAGTGTGTGTGTACTGAAATTAAATCTTTTATCCTTCAGAAAAACATAATGAGTGTAGTAAAACAAAATTGGGTTCGTTGTAAAATTATTGAACTTTTTTAGAAAATTTTGAAGTAATGCAGGCTTGTACATTCGCATTTTTTTAAGCAATGTGACCTTGTACACTCATTCTTTGTGATTGATGCAAACATGAAATCACTTTAACCAATTAATGTATCTTAAGAAAATGTGTCATGTTTCAATCAATTAGAAAGAGTATCACTTCATATATCCTAGGACTGTGAGGATGTCATATTCTTATATGAATATCATAAATATCTGCAAAATTATTGAACTTTTTTGTAAAAAAATTGACAGTATTCTTTTCTTCGTGCTTTTGATGTATAAAATGAGCTTTATCTTTTCTTTAATAGAGAAATCATACTACCGATCAGTGTGATAACTAATCTTAATGATAAAAAACTAATTGAGTTTCCAGCATTGATCGGTAAGTTGTAGGATATAAGGGTTACAAAATACTGCTTTGGTCGGGCTATCCTATAGAACAACACTTAACTAATATTTTGCAAGTTTATATTTCAATCAGTTGGCTCGAAACACTGATTCTAAATGGTTTAACTGCAGATCCAGCTCGTCCCAAGAATGATAAAGCAACCATCCTTGGTGATACCATACAATTGCTAAAGGACATGACTACTCAAGTAAAGAAACTGAAAACTGAACATACTGCACTGTCTGAAGAATCGCGGGAGGTGACATCAATGCTCCTACCAAATTGGCTAATTACATACGATAACAGTATCGATATTGCATACTCTCAACACTATTTTTTCTGTTCACAGTTGACACAAGAAAAGAATGAGCTGAAAGAAGAGAAAGTGACATTAAAATCTGAAGTGGACAGTCTGAACGTGCAGTATCAGATGAGACTAAGATGTGTATACCCATGGGCCCCAACAGACCCATCAGTTGTTATGGGCCCACCACCTCCGTATCCGTATCCAATGCACGTCATCCACCCTTCAATGCAGCCATACCCTTTCTTTCGAAATCAGACTCATGAAGCAGTAGTTCCAAATGTGCATTATGCAGCACGTCCACATCCAAGCAGCAGCAGGTCCCAGAATTCCAGAAACGGATCCTTGGATAATAATAGTAATAGTAATAGGCAACGCGATGAAGTAGAAAGAAGTGATGAGTTTAGTGATGTTGTGACTGAGTTGGAGCTCAAGACTCCTGGATCTGCAGGCACTTCATCTCATCATTCCAAATCAACACCAGAACAGGTGTGTTTTTGTCTGTTAGATGGTTGTGTATTTTTTTTTCATTGTGTTTAGGATCGCATTTTGTTTTGCTCATTAACTTCATCTAGAAACCCGAAATATTTATATGCATTAGTTGCTTTCATGAGGTCTATGAGATTGATGACTAGTTTGCACGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248222.1	2.8e-25	transcription factor bHLH121
Swissprot	Q9LT23.1	1.8e-13	bHLH transcription factor bHLH121
trEMBL	A0A5P1E3B2	2.0e-25	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G19860.2	44.18	4e-39	158	bHLH121	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g97046	AT3G19860.2	249	109	8	12	236	50	292	44.18	4e-39	158
g97046	AT3G19860.1	242	106	7	19	236	3	239	44.21	2e-38	156
g97046	AT4G36060.2	213	99	6	24	221	29	223	38.03	1e-25	113

Ortholog group

Species	Genes
Allium cepa	g447174.t1; g97046.t1
Allium fistulosum	AfisC1G04471
Allium sativum	Asa4G06296.1
Arabidopsis thaliana	AT3G19860.1; AT3G19860.2
Oryza sativa	LOC_Os02g23823.1; LOC_Os02g23823.2; LOC_Os02g23823.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network