result

Gene information

Detail information of AfisC1G00019

Location

Gene	Chr	Start	End	Strand
AfisC1G00019	chr1	3558984	3562990	-

Sequences

CDS

>AfisC1G00019
ATGGATAGCGGGTCGGGTTCAGGCGACGTGCACCACCACCCGATAAAGGGAGTGGTCACGCACGGTGGTCGTTACGTGCAGTACAATGTCTACGGCAATTTGTTCGAGGTTTCCAGCAAATATATTCCTCCTATTAGGCCTGTTGGCAGAGGCGCTTATGGCATTGTTTGTGCTGCTGTGAATTCACAAACACGACAGGAAGTGGCAATTAAGAAGATAGGCAATGCATTTGATAATCGAATTGATGCGAAAAGGACTCTAAGAGAAATAAAGTTGCTTCGTCACATGGATCATGAAAATGTTATTGCCATAAAGGACATCATCCGCCCTCCACAAAAGGATACATTCAATGATGTGTACATTGTCTATGAATTAATGGACACAGATCTTCATCACATTATCCGATCCAATCAGTCATTGACTGATGATCATTGTCAGTATTTCCTGTATCAACTACTCCGAGGATTGAAATATGTACACTCAGCCAGTGTATTACACCGTGATCTCAAACCAAGCAATTTGCTTGTAAATGCAAATTGTGATCTTAAAATTGGCGACTTTGGATTGGCAAGAACAACTTCAGAAACAGACTTCATGACAGAGTATGTTGTAACTCGTTGGTACCGAGCCCCAGAACTGCTTCTCAACTGTTCTGAATACACCGCTGCAATTGATATATGGTCAGTTGGTTGCATACTCGGTGAAATTGGAACAAGGGAACCGTTATTTCCAGGAAAAGATTACGTCCATCAATTGAGGTTGATAACTGAGTTAATAGGATCACCGGATGATACAAGCCTAGGCTTCCTACGAAGTGACAATGCAAGAAGATATGTTAGGCAACTCCCTCAGTATCCTAAACAGAACATTTCCTCAAAATTTCCGAACATGTCTGCTGGAGCTGTCGATTTGTTAGAGAAAATGCTTGTTTTCGATCCAAATAAGCGAATTACAGTCGAGGAAGCTCTTTGTCACCCTTATCTTGCATCTCTTCATGATATTAACGATGAACCGGTCTGTCCACAACCATTCAACTTTGATTTTGAACAAACGTCGATTACCGAAGAAAATATCAAGGAGCTTATATGGAAAGAATCTGTAAAGTTCAATCCTGATATATCCCATTAA

Protein

Gene

>AfisC1G00019
CAGAAATCACAGAAAAATAAATAGAAAAAAGCAGTCATCTTCTCACATAATCCCAGTGACTCGACTTAAAAAGCAACCTGCATAAAATAAAGCTCAGATATTTCACGGGTTTCCTCTTAAATAACCTCTTAAAGCAGCCAATTAGCTTTTTTATCTTCTCATTCCAACGTCTTTGATCTATTTCTAGCCTACTGGATCTTCGTTTTATCCGAAGCGAATCACCATTAAGTAGCCATGGATAGCGGGTCGGGTTCAGGCGACGTGCACCACCACCCGATAAAGGGAGTGGTCACGCACGGTGGTCGTTACGTGCAGTACAATGTCTACGGCAATTTGTTCGAGGTTTCCAGCAAATATATTCCTCCTATTAGGCCTGTTGGCAGAGGCGCTTATGGCATTGTTTGGTGAGATTACCGAACTTCCCTTTTTTCTATTTTGGTACTGATTTGAATCGCTTGTTAGATTCGATTAACCTATGCTAGAATATGAATTATTGCTTGTTGTAGGTTTAGTTGGGGTTTTATCAACTATAGTAAACTTTTAGTGCAGTCGTGTAGGGATTTTGATAGGCTGATGATAATTATTGCGAATTTCTTTTTATTGTTACTCCAATATTTACATGCAATTGTCCAAGAGGTAAAGATGATAGATTGCTAGAAATAGTTGCTCTGTTAACTAATTATATGACTTATGGAATAAAGTGGGATGATTGTATGAGTCTGCTTTACATTGGATATAGAAGTTTCAGGCATATGGCTGTTTCCATGAATGGATGAATAAACACAATATTGAAGATTATAGATATCACTAAAATGCTTGTTTCCTTCTACTTCATTGAAATTCTGGAAAGGGTCAACAATGTAAAACCAAACCATGCACGCATGATATGCTATATTGCTAGGAGATAAAGATTCCTCTAGAGCCTAAGCAATGTCTACACAAGATGGTTATGAATTATTGTCAATGTGTATAAACTTAGTTAGTATTCTTATTTTACTCCCATTTACTATTTATTAGGAATATGATAATTCTGGCATTAACAACAGTCATTATGTAACATGTGCAATGAAATCATACAGTAAACTTATCCACCAAAACGGAAAAGGTTGAACAAATAAAGTAAATTTATGACCATGCCTAAAGATTAATTGCTTGACATTGCCATTGACTGCTGCAGTGCTGCTGTGAATTCACAAACACGACAGGAAGTGGCAATTAAGAAGATAGGCAATGCATTTGATAATCGAATTGATGCGAAAAGGACTCTAAGAGAAATAAAGTTGCTTCGTCACATGGATCATGAAAATGTGAGGGTGTTTTTACCTTTTTCTGTAATTCTCTCCTTTTTTATTGGTGGAAGAGGATATACATCTTTATTTTTCTGTAATGCTAACACTTTGTTACATTTTTTTGTAGGTTATTGCCATAAAGGACATCATCCGCCCTCCACAAAAGGATACATTCAATGATGTGTACATTGTCTATGAATTAATGGACACAGATCTTCATCACATTATCCGATCCAATCAGTCATTGACTGATGATCATTGTCAGGTTTGACATTTACTCTACTTGATATGGTTGCACGGAACCTTTTGTTGTTGTTGTTGTTGTTAGTTTTCTTCATTTCTAATGGAAGAGTATATGAAATGAACAAAGCCAGAGTGTTATTAAAGCAAGATTTTTACAGCAAATGATAAATTCTTTAGTTTCTTTGGACTGATATTCATATGTTCATGTATTCATATAAATACATGCAATCATACCTATGTATAATCTTACCACATTTCCTGAACATCTGCTTTCCTATGTTATATGAGTACACTTTGAATGTTCTTTAAGCTAGTTGGTATTTATCTTATCACCATCTTTGTGCAGTATTTCCTGTATCAACTACTCCGAGGATTGAAATATGTACACTCAGCCAGTGTATTACACCGTGATCTCAAACCAAGCAATTTGCTTGTAAATGCAAATTGTGATCTTAAAATTGGCGACTTTGGATTGGCAAGAACAACTTCAGAAACAGACTTCATGACAGAGTATGTTGTAACTCGTTGGTACCGAGCCCCAGAACTGCTTCTCAACTGTTCTGAATACACCGCTGCAATTGATATATGGTCAGTTGGTTGCATACTCGGTGAAATTGGAACAAGGGAACCGTTATTTCCAGGAAAAGATTACGTCCATCAATTGAGGTTGATAACTGAGGTATGATTCAGCTTTGATCCTCATGTCCTATCATTCTTTATAGCCATCATTACAGTCTAAGACGTCATATTTATGGAGTTTACCTCTAAATAGTTATCTTTGTGCTGCACTTTCTTTAAATTTGTTTACGCCTTTAGGATAATATATCATTATCTTCAGATAGGTTTTGTACATACTAACAGTTAACGTCGTCGAAGAAGATCATATATTGAAGTATGTGATTACGTCAAAGTTTTGGCAAACAATAAGTTCCAAAATACACTTCTGCCCCTTCCCCTAAACAAGTTTCACGAAACACCCATAGAATTATTTTCATGAAAATTGCAAATATTTGTAGTTTTCAGAAACTGCAAATATTCAGTCTAAAGTGCAAATATTTGCATTTTTTAATATATAAAAAATGGCAGATGTTTGCAAAAAAAGAAAAGAACTTTGATTTACTCATATTATCTATCGACGAGGGAAAAAATGAAAACAAAAAATTAACGAAAATAATTGTAGGGAGGTAATTTGAAACCTATTTTTAAGGAAGAATGGCAAATTTAAAATAAGGATGTCATCCTAATTTCCACATTTCTTTTGGCTAAAATAGTTAATAGGATCACCGGATGATACAAGCCTAGGCTTCCTACGAAGTGACAATGCAAGAAGATATGTTAGGCAACTCCCTCAGTATCCTAAACAGAACATTTCCTCAAAATTTCCGAACATGTCTGCTGGAGCTGTCGATTTGTTAGAGAAAATGCTTGTTTTCGATCCAAATAAGCGAATTACAGGTAAATTTGTTATCTTTTTTCATCGTGTCTAGCAACTTTAAACTATTAACTTTTAATTTGTTTCAATATACATCTCTCTTTTATATCATTGCAGTCGAGGAAGCTCTTTGTCACCCTTATCTTGCATCTCTTCATGATATTAACGATGAACCGGTCTGTCCACAACCATTCAACTTTGATTTTGAACAAACGTCGATTACCGAAGAAAATATCAAGGAGCTTATATGGAAAGAATCTGTAAAGTTCAATCCTGATATATCCCATTAAGGAATTTTACTGAGGTTTGTCAACCAACTTATCATAAAACTTAAAATCTTATTTAGCACATATTTTACTTTCCTACATGGCTATAAAACTGGAAATTCTTTGTTTATAGAAGACATATTTAAAGGGAGGTTTTGTCAAATATTTAACTATAAATATTGTTTCACCGAACATTTATCAATTTGCAGTTAAAACCGCAATTGCAAAAAGTGCAAATATTTGCACTAAAATCTGCCAATATTTGCGGTTTTTAATCCAAATATTTGCAGTTTTAAGTATAAATATATATGCTTAATATTGCAAATTTTTGTTGAAAATAGTTATAGGGTTATTTGATGAAATTTCTTTTTGGGAGGGAGCATAAATGAAATAAGTTTGAAAATAAGAGTGTCCTAATTTCCACGTATTTTAATCCTTTGCTATTTGTGTTTATTTTATGCAGAAAAACCAGTTATGCAAGTCAAATTTCAATGGGGGGGTCTTAGTATCATTTAAACCAATGTAAGGTGCTCTATAAATATGCATGGCTATGGTGCTCTCACTGAAGAAATATGTATGCAGTATGATGCTATTGTGCCTTTCTATGAATTATGAAACTGATCATGAGTGTATTTCATTCAGACTTGTTGGAAAACTGTATGTCTTATGTATATTGATTTATGCTATTTGTATGAAAATTTAGCTTCTCCTGATATTTGATTTAACATATAAAAATTCTGTATATTTAATATTTCCGTGTAATGGTAAAAAAACTGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_002278860.1	3.3e-197	PREDICTED: mitogen-activated protein kinase homolog MMK2 isoform X1
Swissprot	Q5J4W4.1	8.4e-190	Mitogen-activated protein kinase 2
trEMBL	D7TV55	2.4e-197	Mitogen-activated protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01370.1	86.63	0.0	669	ATMPK4;MAPK4;MPK4	MAP kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00019	AT4G01370.1	359	48	0	16	374	17	375	86.63	0.0	669
AfisC1G00019	AT1G01560.2	356	53	0	16	371	14	369	85.11	0.0	641
AfisC1G00019	AT4G11330.1	371	83	1	1	371	5	372	76.82	9e-178	619

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	46	328	234.2	1.5e-69

Gene Ontology

Accession	Ontology	Name
GO:0000165	P	MAPK cascade
GO:0005515	F	protein binding
GO:0000746	P	conjugation
GO:0005829	C	cytosol
GO:0004707	F	MAP kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005802	C	trans-Golgi network
GO:0007067	P	mitotic nuclear division
GO:0009409	P	response to cold
GO:0009524	C	phragmoplast
GO:0009555	P	pollen development
GO:0009574	C	preprophase band
GO:0009620	P	response to fungus
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010051	P	xylem and phloem pattern formation
GO:0010120	P	camalexin biosynthetic process
GO:0010150	P	leaf senescence
GO:0010183	P	pollen tube guidance
GO:0010224	P	response to UV-B
GO:0010229	P	inflorescence development
GO:0010311	P	lateral root formation
GO:0018108	P	peptidyl-tyrosine phosphorylation
GO:0042542	P	response to hydrogen peroxide
GO:0048481	P	plant ovule development
GO:0051301	P	cell division
GO:0060918	P	auxin transport
GO:0080026	P	response to indolebutyric acid
GO:0080136	P	priming of cellular response to stress
GO:2000037	P	regulation of stomatal complex patterning
GO:2000038	P	regulation of stomatal complex development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20600	MPK4; mitogen-activated protein kinase 4	EC:2.7.11.24	MAPK signaling pathway - plant	ko04016
K20600	MPK4; mitogen-activated protein kinase 4	EC:2.7.11.24	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network