result

Gene information

Detail information of AfisC1G00068

Location

Gene	Chr	Start	End	Strand
AfisC1G00068	chr1	8510949	8513017	+

Sequences

CDS

>AfisC1G00068
ATGAATGAACTTCTAACCCTAGAAGATTCGTTCGATCTCGACCACAGTTTCACCAGCAGCACGGCGTCCGCATCCACATTCGCCTCCGCGTCCACGTCCAGTGCCCGGAGCAGCCTTAGCCTCAGTCTCCCTTCCTTCTCCGCCTCCACTTCGCTGATAAACCCGCACCCGCATTCCAAGTTCAATTCCAGGTCGCATTGGGAGGCCATCAGGGCCGCTGCCAACTTGTCCAAGGATGGGGTTTTCCATCTGAGGCATTTGCAGCTTTTGAACCATCTCGGATCTGGTCATCTCGCTAGGGTTTTTCGTTGTCGGATTAAGGGATCCGATGATTTAGGGTTCGCGCTTAAGGTCATCGACTTGGAAGCTGCAGGGAAATTCTCGCATGTAAGAACGGAAGCTGAAGTGCTATCGGCCTTAGACCACCCGTTTCTTCCGACTCTTTACGCTCGCATGGATGCCTCTCACTATGCTTGCTTTCTAATTGATTACTGCCCTGGAGGAGACCTTCACTCCCTTCTTGTAAGACACCCCTCCCATAAACTCCCTTTATCCGTAGTTCGATTCTTCGCATCCGAAGTCCTCCTTGCCTTGGAGTACCTCCATGCCCTCGGCTTCGTGTATCGCGATCTCAAACCCGAGAATGTGCTTATTCGTTCTGACGGACACATCATGTTGTCCGACTTCGATCTTTGCTTCTCCTCCAAGGTTAAACCGCGTCTCTACCAGAGATGCGGAGATTTAGAGTTTGTGGCAGAGCCAGAGGATGCATATTCACGAGCGTGCGTGGGGACTCACGAGTACTTGGCACCTGAAATAGTGAGTGGAGGAGGGCATGGGAATGGAGTAGATTGGTGGGCATTCGGAATATTTCTATACGAGCTTGTTTACGGTAGGACGCCTTTTAAGGGATCAAGCAAAGAATCGACATTAAAGAATATAATGAAACGCGAATTAAGGTTTCCCGATGAAAGCAACGATGCAAACGCTACAATTCGAGATCTAATAAAGAAGCTATTGGTGAAAGACGTAAAAGGTCGGATGGGAAGCAAGAGAGGAGCGTCCGAAATCAAAAGGCACGAGTTTTTCGAAGGGGTAAAATGGGGACTAGTGAGAAGTACAAAATCACCTGTGGTGGTGGGACCCGAGGGTGCGGTGGTGGCGAGGGGGGTGGAAAAGAAGAGAGGGTGGTGGAGTAAGGTTAAGGGGGGTAGTTTGGGAAGTTTGGGTAAAAGTGTTTGGTGTAAAAGAGGTCTTAAGTTTGGGTTCATGAGTTATAGTTACAAGAAGTTGAGTTGCAAGAAGATTAAGAAGTTGTGA

Protein

Gene

>AfisC1G00068
CTCCTCTCTTCTCTCTCTCAAACTTCCAAGTAAATCGCCATGAATGAACTTCTAACCCTAGAAGATTCGTTCGATCTCGACCACAGTTTCACCAGCAGCACGGCGTCCGCATCCACATTCGCCTCCGCGTCCACGTCCAGTGCCCGGAGCAGCCTTAGCCTCAGTCTCCCTTCCTTCTCCGCCTCCACTTCGCTGATAAACCCGCACCCGCATTCCAAGTTCAATTCCAGGTCGCATTGGGAGGCCATCAGGGCCGCTGCCAACTTGTCCAAGGATGGGGTTTTCCATCTGAGGCATTTGCAGCTTTTGAACCATCTCGGATCTGGTCATCTCGCTAGGGTTTTTCGTTGTCGGATTAAGGGATCCGATGATTTAGGGTTCGCGCTTAAGGTCATCGACTTGGAAGCTGCAGGTACACTTCAATTTTCTTACATTTTTACTATTGATGAAAAATGTCCGTACTAAAATCCCAAATTCGAAGCATGACAATTGTTTTGAATAAATGTACCTCACATCAAAAGTTTAGGACCAACGGATAAGTCTAGCTTTATGATTTGTATATGATTAGTGTGCAGTAGGCTACAAGTTAATCAACACCGTAATTAATAATATGAACATTATTATTCAAATGAGATCCTTTTGGCTGGTGTACTTCTGCTCTGATTCTTTGCAGAGCAGTGATCCTTATACCTAGAAGTAAAATTTTCAAACTAAAATCATATATGTAAATTACACTAACAAGATGATCAACGACATTAAAATAGTAAGACATAGACTAATAGCTCTATTATTTGAAAAAACACAGGGAAATTCTCGCATGTAAGAACGGAAGCTGAAGTGCTATCGGCCTTAGACCACCCGTTTCTTCCGACTCTTTACGCTCGCATGGATGCCTCTCACTATGCTTGCTTTCTAATTGATTACTGCCCTGGAGGAGACCTTCACTCCCTTCTTGTAAGACACCCCTCCCATAAACTCCCTTTATCCGTAGTTCGATTCTTCGCATCCGAAGTCCTCCTTGCCTTGGAGTACCTCCATGCCCTCGGCTTCGTGTATCGCGATCTCAAACCCGAGAATGTGCTTATTCGTTCTGACGGACACATCATGTTGTCCGACTTCGATCTTTGCTTCTCCTCCAAGGTTAAACCGCGTCTCTACCAGAGGTACAGTTGCATAACCACTTATTATCACAAAACCATTCAGATTATTGTGTCATATCATAGTTAATTCATCATGTTGATGTTTTTTTTTTGTACAACCTTGTGAAAAATACTCGGGGTATGTATTATGGATTTAATACATACTTTCTCAAAGCTTGATTTTCTAAATATTCAAAAACGATAATGTGTTATCCATTATGTCAATTGTCTGATGTTGGACTATTCTTGGCAGATGCGGAGATTTAGAGTTTGTGGCAGAGCCAGAGGATGCATATTCACGAGCGTGCGTGGGGACTCACGAGTACTTGGCACCTGAAATAGTGAGTGGAGGAGGGCATGGGAATGGAGTAGATTGGTGGGCATTCGGAATATTTCTATACGAGCTTGTTTACGGTAGGACGCCTTTTAAGGGATCAAGCAAAGAATCGACATTAAAGAATATAATGAAACGCGAATTAAGGTTTCCCGATGAAAGCAACGATGCAAACGCTACAATTCGAGATCTAATAAAGAAGCTATTGGTGAAAGACGTAAAAGGTCGGATGGGAAGCAAGAGAGGAGCGTCCGAAATCAAAAGGCACGAGTTTTTCGAAGGGGTAAAATGGGGACTAGTGAGAAGTACAAAATCACCTGTGGTGGTGGGACCCGAGGGTGCGGTGGTGGCGAGGGGGGTGGAAAAGAAGAGAGGGTGGTGGAGTAAGGTTAAGGGGGGTAGTTTGGGAAGTTTGGGTAAAAGTGTTTGGTGTAAAAGAGGTCTTAAGTTTGGGTTCATGAGTTATAGTTACAAGAAGTTGAGTTGCAAGAAGATTAAGAAGTTGTGAGTAGTCCTTTTTTCTAGAGGCGTAGTATGATTATTTTTTTGGGGATTGAGTTGTACAAATGGTGAGGTAGTTGTATGTAGTAATGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020676897.1	1.4e-135	serine/threonine-protein kinase WAG1
Swissprot	Q9C8M5.1	1.5e-113	Protein kinase 3
trEMBL	A0A2I0W4L0	1.0e-135	Protein kinase PINOID

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G53700.1	52.05	5e-114	407	PK3AT;WAG1	WAG 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00068	AT1G53700.1	438	157	10	12	399	11	445	52.05	5e-114	407
AfisC1G00068	AT3G14370.1	418	146	9	12	391	12	422	54.31	4e-113	405
AfisC1G00068	AT2G34650.1	405	173	10	23	379	10	410	44.44	2e-86	316

Ortholog group

Species	Genes
Allium cepa	g409795.t1
Allium fistulosum	AfisC1G00068
Allium sativum	Asa7G00547.1
Arabidopsis thaliana	AT1G53700.1; AT3G14370.1
Oryza sativa	LOC_Os03g14840.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	89	363	178.9	1.1e-52

Gene Ontology

Accession	Ontology	Name
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005730	C	nucleolus
GO:0006468	P	protein phosphorylation
GO:0008728	F	GTP diphosphokinase activity
GO:0009507	C	chloroplast
GO:0009734	P	auxin-activated signaling pathway
GO:0009860	P	pollen tube growth
GO:0009882	F	blue light photoreceptor activity
GO:0009908	P	flower development
GO:0009925	C	basal plasma membrane
GO:0009958	P	positive gravitropism
GO:0009986	C	cell surface
GO:0010150	P	leaf senescence
GO:0010540	P	basipetal auxin transport
GO:0015970	P	guanosine tetraphosphate biosynthetic process
GO:0015979	P	photosynthesis
GO:0019901	F	protein kinase binding
GO:0032550	F	purine ribonucleoside binding
GO:0032555	F	purine ribonucleotide binding
GO:0035639	F	purine ribonucleoside triphosphate binding
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0048825	P	cotyledon development
GO:0080167	P	response to karrikin
GO:1901981	F	phosphatidylinositol phosphate binding
GO:2000114	P	regulation of establishment of cell polarity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network