result

Gene information

Detail information of AfisC1G00119

Location

Gene	Chr	Start	End	Strand
AfisC1G00119	chr1	16330896	16337674	-

Sequences

CDS

>AfisC1G00119
ATGTTGGAGAGTAAATGCAATGGAGTGGCGAGTAGAAAGAATTTATCTACTAATGAAACGTTGATTACGTACAAGAGAAGGAAGCGCACACGAACTGCTGAGATATTTCCTCTTGAAAATGGCGGCCTTTCAGCCGAAGAGGTTGACAATGGAAAAACAAATACTCATTGGAGACATGTGCTAAGTCAGATGCTGCAATTGACCGATGATGGTGGTATCAAGTGCTGTATTACTGACGCACTAATACATTTGCCTTCGCGAAATGCCTCAAGGACTAATATGACCGATGTTAACAAAGCAATTATTGAACCAAAGCACAAATGCAACAACTATGTTCAAATGGCAGATCTTTCAGTGAGTAAACCTGAAACTGGAATATGTGAACAAACAGATGCAGAAGATAACAATTTAAAATGCAAGAAAACCTTCTTCAATGTACTTTGTTCAGAGGAATTTTTACTGTTGTGCAATTTAGTTTGTGGAGGCATCAATATTAACAAATTATTTAACATTGAGCATATGAACTTGAAGATGAAAAGTGGGATTTATGGTCTGTCACCAGGAATATTCTTTGATGATCTTCAGCAGATGTGGAAAGAGTTTCAGCGAGTAGGTGAAGAAATCGTTGCCCTTGCAAGAAGTCTCTCAAACATGTCAAAGGATAAAATCGACTGTGACATTGACAAAGATGATCTGGTCCATGAAGTTTACCCAAAAAATTTGAAGCCAAATTGCAGGGGTAGTTCTACTACAAAAAAGGACGATGCCTCCGGTTCAGGAACTCAAATCATTCAATTCTCTGACTTGGTTCCTAACAAAAAACCAAACCAAACCATAGTTCCCATGCTTTACAAAGCGTGCAACTGCAAAAAATGCGGCTCTACAGCAAACGTCCATGACAGCCTCATATGCGATGAATGCGAATCTGCATATCATGTCACTTGCCTCAACCCAGCTGTCCAGAACATTCCTTCTAGAAGCTGGTACTGTGATTCCTGCAACACTAACAAAGAAACAACCACCACAGAATCTTCCGAAGCTCCCATCGTGCATGACCAAAACACCATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGAAAAGGAAGAAAAAGGAGAAAACTTACATCAAAACTGCACAGTTTGCGAGAAACTCGAAATCGTTGCAGAAGCAAAAGAAGAAATTCCATTAACTTCAAGAACTGCACTATCGCGATTGTGCAAGCATTGTGGTACATGCGAAGATGAAGATAAGAGGTTTTTAATATGCGGGCACTCAGAGTGCCCTTATAAGTACTACCATATAAGGTGTTTGAAAAATAGCCAGGTTGCTGGGTACCAGCAAAGGGATATGCCTTATTGGTACTGCCCTTCGTGTTTGTGCAGAGGGTGCTTTAGTGATAAGGATGATGAAAAGATTGTGTTATGTGATGGATGTGATGAGGCTTATCATATATATTGTATGAAACCACCTCGGGCTTCTGTGCCTAAAGGGCAGTGGTACTGCTTGCAGTGTAATGTTGAAAAGGCGAAGGAAGGTGTGAGAAGGTATGAACAATGGGTTTTGCAGCAACATGGGCAAAAATATGATGAGTCGACCACTGCTCGGGTGAAGAAGAAGAAGAATGATGTGTAG

Protein

Gene

>AfisC1G00119
GTTAATGTCGTGTGGAAAGCCAGTTTTCGCTGCCCAGTTCAGTTTTAGTCAACATAACAACTGCAGAGCAAAAACTATCCGTTCCTCGTTCGCTCTTCTTCAAACTTTTAAATTCCCCAACGCCGCACTGTACAATTCCCAAAATATCCTTCTTCGTTGAACCTAGGGTTACGAACTTTTCCCTCCTTCAGGATCCGTTCTTCCCCGTAATCGATTCCTCCCGAATTGAGAACTAGGGTTTTCAGGAATGTTGGAGAGTAAATGCAATGGAGTGGCGAGTAGAAAGAATTTATCTACTAATGAAACGTTGATTACGTACAAGAGAAGGAAGCGCACACGAACTGCTGAGATATTTCCTCTTGAAAATGGCGGCCTTTCAGCCGAAGAGGTAATACTTTTAAGTTGTTCTTGGTCATTATTTGTGTTGTGTGGATATCGAGTGTAGGTGTTTTGTTGTGTTGGTCTGATGTAAATTGTGTGTTTATTGTCTATCTCTTACTGTTAAAAAAATGACTTTGAAAATCTGTATTTATCCAGATTACATGGTAAAAGATTCTTTTTCACAAGATTTAATTTACGTAAGTGATAAACTTTTCTTGCCATATGTTCTATGAGGGCTGCTGTAATCTCGCAGAAGTTATATTATATGTTTAGTTTAATTTCTTTGAAGCTAACACTTTATTGAAAATCAAAGTGGTCAATTATATCATTGTAGATCTAAATCAACTAAAACTGATTTGTAAATTGAACTAGGAAATAATGTTTAAAAAGACCAAAAAGTTTTTAGCAAAAAATATCAGGAAGATAATTTAGATAGTTGATAACTTGTGGTGTTTTAAAAGTTAACATGGATAAAGCAAAACATTCTAGAATATATGCCTTGAATATGCCATACTACACGAGTTTACATTTTTAGCACTTGAATACATATGAGTTTACATTTTTAGCACTTGAATATGCTATAGTAACATTAAATTTGTATCACAATAGTGATATTTTGTACTTGAATAATACACATGAGTTTACATTTTTAGCACTTGAATACGCTATAGTAACATTAAATTTGTATCACAGTAGTGATATTTTGTATAAACTTATGCCTATTAAATAATAATTATCTGGGGCCTACTTGAAAGTGCGGCTCAGGCAATCGAGACCCCGTTAGGCGCGGTTCTATAATTTATGCACCCAGTGTGTAGTAACAAGCCCTGTTTTTTGTTTTGTTTTTGAGTTCATAGGAAACCTTAAGATCATGGTATTCATTGATACTCACTTAAGTAAACCACGCCGTGTATCTACCCCGCATTTATTTAGTAACAAGCCCTGTTATTACAATTTTATATTTGCATCAGTCTTGCACATTTTTATTTGATTCTGAGAGTTAAAACATAACATTTTTGATACAGTCCATACCTAAACATGAAGTTTTACAAACATCTAATAAATATATTACTGCATACATACATGTGGCAGAAATTTGCCAATATGCACATCAAAATATGACTTGACTTCAAGGAATTATGGTAAACAACCAAGCGTATTTTCAGGGGAATATCTCGGAAATTGAAATATTTATGTTTGACGATTATTTTTTCTGTTTTTGCAAGGCAATTAAATTTTCTTTTGCTTTTATTAAAGAAGTATTTTGATTTTAAGAATTCAATAAGTTAAAAAAACTAATTTTTAATACATAACTATTTAAATTTAAAAAAATTAAAATGTTTTCCTTCAATTAAAATTTAAAAAAGGAGAAAATATTGCTTACTATTTCAAATCAAATTTGACTTTTTGGTTTTTCGATTTTGAAGGTAAAAAAGTTGCATTTAAAAGCTAGGGCCCTTAAGATATGAATTTCACTCTTCTAGAAAGTCTGCCTTTTAACATGCTTTGACAATGTCATTTGAAAGCCTTCTCTCTTTCATTTAATCCAATGAGTGTGTAACTCAAACTGGGCTTTAAAGACTGGATATAAACAATCAACATCATGTTGTCACATGTAAATTGTAGTTTGATATCCTTACCCTAAAACTATTACATTTTATTCTTAAGCTTCATAGACCAAAAAAGTATACATATCTGTAACCTGAAACAATGCCATTACAGTTTCTGTAGAGTATTTATTTGTATTAAGTTCATGTTATTGGAGTAAATATTTTGATGAAAAAAGAAAAGGAAAAAAACCGTGTCATCATTATTTATTATACAGCCATGTTTGCTAATTCTGCTCTCTGATAAGAAGATAAATAAGAGATCTACAGCTTACAGAACCAAATGTACGGTTGTAGTTTGGTTTGGCACATGAATAGTATTAAATTGATTCTGGGAATTTATGCTTTGGCAATTACGCAAGCATTTGTCATAGTATATTGTGTACAAAAACCTGTAGATGGAATAATTTTGTTCATATGTCTTTGGACACGTGGTAATTGTGTATGATTCTTTGTAGTTAACATGGTCAATTAATATGGGCAATGATAAGTAATTAAATCATTCTGTTAATTTTAGGATATTCCTTCACCCTCAACTCAATGTAATGGTTTCTGGGAATTTATACATTGGCAATTACGCAAGCATTTGTCGTAGTATACTGTGTACAGAAAACTGTAGACAGAATACTTGTGTTCATATGTCTTTGAACACGTGGTAATCATGTATGATTCTTTGTAGTTAATATAGTCAATTAATATTGACGACGATAATTAATTAATCCATTCTGTTAATTTTAGGATATTCCTTCACCCTCAACTCAATGTAATGGAATTAATTTTGGATGTGAGCATAAAGTATAGTTAATGAGAGTAGCAGTCATATGTGCAATCTTTGCAAGGTCATTGGTTGTAATGATGAAGCTGCTAGGCATGAAAAAAACATATTACTGCTTGTCTGCATGTGTCTGCACGTTCAACGGTTGTAAAAGATGTTGCTAGAGAGCTAAATATTCACTAACAAGATATGAAAATATTTTGAAAGAAAACACTTAGAAGGAGCCTTCCACAGATGGTAAAAGAAGCTCAAAGCTTGATCTGGATTGCAACATTAAACACTATGCGACAATTTTGGAAAAGTTTATCGGTCGTTGATGTGATGCATACTTTTGTTGGTTTGTGTTCATTTAGCAAGTAATTTTTTTGGCAAAGCGATAGATATGAATTAATATTGTTGAGAATAACACTTGTCCCTTTATAAGGCATGTTCTTCAGTCATCCTCTACTATACAAAGATTCTATCATCAAATACTTCAATAAATGTTTGTTGGTTAAAACAGACAGTAGATCTGTAAAATACTATACCATTTATCATTTAAAAAACAGTAGTAGCTAACTCTATATTGTCTTAATGTAAGAAATATCATTGTACTGTTTTTCAGTTAACCTACAAACACACAAAAATAAACATAAATATGTCTGCACGTTAATTTAATAGCAAATTACTTGTTACAACATGCATACTTCTTGCTGTATTCATATAATATAGGTTTAGGGTCTAATTTGGATACTAATGAAGTAGTACTACCTAATTATCATATGTTTAATTTATGTGATGTAATGTTGATTTAGGGCATGTCTCAACCATGCCGTAATATAAGTAAATAAACTAACTATGACATGCATAAATTCTGGTGTATTCATGCAATATAGGTTTAATTTGATGGTAGATGTTGGAATATTTTGTCCATTGGTGAAGTACAATGTCACTCCATATTTATGGTTTTAACATTTGGTTATTGGATTATGGGGTCTTCTTAGAGCTACCAATTCCTTTGTTTTAATTTACAACATACCCCCACATGTGATATCACTTACAAACATGTACGAGCAGGTTGACAATGGAAAAACAAATACTCATTGGAGACATGTGCTAAGTCAGATGCTGCAATTGACCGATGATGGTGGTATCAAGTGCTGTATTACTGACGCACTAATACATTTGCCTTCGCGAAATGCCTCAAGGACTAATATGACCGATGTTAACAAAGCAATTATTGAACCAAAGGTACTGTGATAATGATGCTTCCTTGGTCCTTTCATTTGTCATTAGACAGCTAACTTGTATGTAGCGTAACTAGAATGTCTTCATTCTTAGCAGCACAAATGCAACAACTATGTTCAAATGGCAGATCTTTCAGTGAGTAAACCTGAAACTGGAATATGTGAACAAACAGATGCAGAAGATAACAATTTAAAATGCAAGAAAACCTTCTTCAATGTACTTTGTTCAGAGGAATTTTTACTGTTGTGCAATTTAGTTTGTGGAGGCATCAATATTAACAAATTATTTAACATTGAGCATATGAACTTGAAGATGAAAAGTGGGATTTATGGTCTGTCACCAGGAATATTCTTTGATGATCTTCAGCAGGTAACATTGTTATCCAAGCAATTATTGTCCAGTATATTATTTTGGGGTACTATTGTCATGATGTGAATTTTCTTGTGAAAATTAGGTAGGTTTTTGTTTGTTTTAGTAATAATAGGTCTTGAATTTATTTTTTCAAGTTTCTTTGGCCTTGTAGTAAATTTAAACTACACCTAATTCGTATATGACAATACACGCTAGTAATAGAATAAGCGTTCTGTAATCTGTGCCGTTATTCTGATAAAGATTTAACTTGAGCAGTGTAGAGTCATTTTCGTTTAGCATGAAGTATCAGTTTCTGCTGCTCCTCCTTGTTGGTTTTATACTTTTTGTTCTCTTAGTCTAAGTTTTCATTAGTTGTTTCCAAATTAACACATGCTCATTAGTAGTTTAGTACCATAGGTTTTCTTGCAGCAATTAACACTTAAATTCTAATATGCTTATGCATGGGAATTTGTTTAGACTAAATTTAAGATGCGACCCATTTAGGTTTTTAAAGGATAAATACATTTCCTAATAAATTGCCACATTGGACAAGAAATGGTTACATTTTATGCACAGTTCTTGTCTAAATGGACATTTACTTTATTTAAAAATGCAAAACCAGCTTTATTTTGCCTAAATGGAAATTTAACTTTTTGATTGATACTTTTGTGTATTTGCGAAATATGCAAAACAAGGCACAAGGATAATGATTAGTCTGCTGTTTTTTCTCCATTATTCAAATTGTGAACGGATCTAAATTTTCTCACATTAAATGTATTTCATCTTTTTATATTTTTTTTTCTAATTTATTATTTTTAACTTTTTTGCAAACCAGGTATTTTATTATATACCATCTTTCGAAAATATTTTGCAGATGTGGAAAGAGTTTCAGCGAGTAGGTGAAGAAATCGTTGCCCTTGCAAGAAGTCTCTCAAACATGTCAAAGGATAAAATCGACTGTGACATTGTAAGGGTAACCAAAATGTAGATACCTTACGTGTAATTTACGAAATCCATTACTTTGAATTTCATACCATATCGAGAACATCATAATTACACCATATGTATGATTTGTGTTCATCCTTCTCATTTTTCTTCTAAATGTGCGTAGGACAAAGATGATCTGGTCCATGAAGTTTACCCAAAAAATTTGAAGGCAAGTTCTGATGTCTATAATATATTATTCTATCTCTATACACAGTGGGTCTTTGAATATAACACCAGAAGTGGATAAACACGCACACAAACACACACACATTTCCTTACAATTTCTACCTTTTCCAGCCAAATTGCAGGGGTAGTTCTACTACAAAAAAGGACGATGCCTCCGGTTCAGGAACTCAAATCATTCAATTCTCTGACTTGGTTCCTAACAAAAAACCAAACCAAACCATAGTTCCCATGCTTTACAAAGCGTGCAACTGCAAAAAATGCGGCTCTACAGCAAACGTCCATGACAGCCTCATATGCGATGAATGCGAATCTGCATATCATGTCACTTGCCTCAACCCAGCTGTCCAGAACATTCCTTCTAGAAGCTGGTACTGTGATTCCTGCAACACTAACAAAGAAACAACCACCACAGAATCTTCCGAAGCTCCCATCGTGCATGACCAAAACACCATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGAAAAGGAAGAAAAAGGAGAAAACTTACATCAAAACTGCACAGTTTGCGAGAAACTCGAAATCGTTGCAGAAGCAAAAGAAGAAATTCCATTAACTTCAAGAACTGCACTATCGCGATTGTGCAAGCATTGTGGTACATGCGAAGATGAAGATAAGAGGTTTTTAATATGCGGGCACTCAGAGTGCCCTTATAAGTACTACCATATAAGGTGTTTGAAAAATAGCCAGGTTGCTGGGTACCAGCAAAGGGATATGCCTTATTGGTACTGCCCTTCGTGTTTGTGCAGAGGGTGCTTTAGTGATAAGGATGATGAAAAGATTGTGTTATGTGATGGATGTGATGAGGCTTATCATATATATTGTATGAAACCACCTCGGGCTTCTGTGCCTAAAGGGCAGTGGTACTGCTTGCAGTGTAATGTTGAAAAGGCGAAGGAAGGTGTGAGAAGGTATGAACAATGGGTTTTGCAGCAACATGGGCAAAAATATGATGAGTCGACCACTGCTCGGGTGAAGAAGAAGAAGAATGATGTGTAGAATTTGTTCAAAGTGTCTTGCTTTTAATGGTTAAGATGCACCATTATACTAGGATTTTGGATAGGGGGATATGAGAGGAAAAGGTAAAAATGTAAACTTTTTTTTTCTTTTCTTGAAAGGAAACGGGAATACAGAAGATGCTTGGCTTCTGTTGGTGATTCCATTCTTTTTTTTTCTTTCTTTCTTTGTGATGTAATATTTACAGTTGAGCTTGGTACAGTTGAAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247534.1	1.2e-126	PHD finger protein EHD3-like isoform X1
Swissprot	Q6ZJM9.1	3.3e-86	Proetin EARLY HEADING 3
trEMBL	A0A5P1E186	8.4e-127	PHD-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G77250.1	31.83	1e-56	218		RING/FYVE/PHD-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00119	AT1G77250.1	421	211	10	130	534	117	477	31.83	1e-56	218
AfisC1G00119	AT3G01460.1	72	38	2	466	535	1289	1359	43.06	8e-13	72.4
AfisC1G00119	AT3G01460.1	343	192	13	39	333	1015	1334	23.32	1e-08	58.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00628.26	PHD	Domain	289	335	36.1	4e-09
PF00628.26	PHD	Domain	467	513	43.7	1.7e-11

Gene Ontology

Accession	Ontology	Name
GO:0000792	C	heterochromatin
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0003714	F	transcription corepressor activity
GO:0042393	F	histone binding
GO:0004842	F	ubiquitin-protein transferase activity
GO:0046872	F	metal ion binding
GO:0005737	C	cytoplasm
GO:0016491	F	oxidoreductase activity
GO:0006259	P	DNA metabolic process
GO:0007338	P	single fertilization
GO:0007526	P	larval somatic muscle development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016574	P	histone ubiquitination
GO:0019907	C	cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030717	P	karyosome formation
GO:0033601	P	positive regulation of mammary gland epithelial cell proliferation
GO:0034647	F	histone demethylase activity (H3-trimethyl-K4 specific)
GO:0034648	F	histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034721	P	histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0036098	P	male germ-line stem cell population maintenance
GO:0042752	P	regulation of circadian rhythm
GO:0043970	P	histone H3-K9 acetylation
GO:0043992	F	histone acetyltransferase activity (H3-K9 specific)
GO:0045475	P	locomotor rhythm
GO:0046425	P	regulation of JAK-STAT cascade
GO:0060444	P	branching involved in mammary gland duct morphogenesis
GO:0060763	P	mammary duct terminal end bud growth
GO:0061038	P	uterus morphogenesis
GO:0070193	P	synaptonemal complex organization
GO:0070822	C	Sin3-type complex
GO:1902275	P	regulation of chromatin organization
GO:2000737	P	negative regulation of stem cell differentiation
GO:2000864	P	regulation of estradiol secretion

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network