result

Gene information

Detail information of AfisC1G00163

Location

Gene	Chr	Start	End	Strand
AfisC1G00163	chr1	22226210	22227962	+

Sequences

CDS

Protein

Gene

>AfisC1G00163
ATGTTACTAGCATTGCTTATATTCAGCTTAAGGAAAAATAATAATAATAGAACTAACAGTTACTACATTGATATGTGCAGTGGATACATGTCGCCTGAGTATGCAATGGATGGTACTTTTTCGGTGAAATCAGATGTATATAGTTTTGGTGTATTGGTTCTAGAAATTATAAGTGGAAAGAGAAACAAAGGAGTTTATGCAAAACCTCCACATATAAATCTTCTAGCACAGGTGAATATTTTACTTTGTATTTTGTTTTTTAAAGGTGAAACCCAATGCACGATGCTTCCGCACGATAGCGGACTCTGCGGAGGTTGTACGCAGCTTTTTGCTCGTATTGTGAAGAGGCTGTTTCGAGACTCGAATCTGACTCCTAGATTACCATGCGGGTGACTTAACCGTTGCGCTAAGGCTCCACCTCTGTATTTTTTTTTAACTTAGGATAAAATTGCATGTAAGTTTATCGGCCTGTCGGGTTCTCCTGGGTTTTCAAAAAAAAAAAAAAATTGTATAGAGTTTATACAAAGAATATAGCAAGAAAATTATTTCCATGGAAACATTTTGTTTTGTTTTTAAATAAGGCATTTAAATTTTATTTCTACACAAATGAAATCAGTCCAAGTACATAAATTTCCATGGGACCTCATTGTATTCTTAATTTCTGAATTACGTGTTCATTACTTTTTTTTCATTTTTATTTCGTAATTGGAAATAACAAATGGTGGTTAGGTGAATATTTTGTTCGTATTGATAGTGATTACTTGTTTTATTTTGATTGGTTGGTTGCTGTTATTTTATTAATTTATTTGTTATTATTAATATATTTTTATAAGGAAAACGGATGAGTAAAAAATCTGCCCAGCCGCACGGTTGGTTGCTATTGGCTTTGGCAGAGAACTTTTTATATTCTTATTGTTGTTTGTGTAGTTTAAATCTTCTGAAAAAAAAGGCCATAAATCTTTGTTTTGTTGGGTTTGTTTTTTCTACTCTCTGATAAAGGTTAGAAAATCCTAATAGTACACATGCTTCAAATTTATAAACCAAAAATTAGTAACACAGTTTCAAATTTATTTTCAAAAACATTAGACGCGCAACTTTATTTTCGAACTTTGTTCACTTTGGGTCCCTCTCAAGAACAAGTTTCATGAAAGTCTCTTATAATTATTTTCAATGAAAAATTGCAGTTTTTTTCTGCAAATATTATAGTTAAAATTGTAAATATTTGCAGCTTGCAAATATTTATAGGAGAAAAAGGAATTTTTTCTGAAAACAATTCCAGTGGTATTTCGTGAAACGCATTTTTTGAAAGAGGCAATAAAAGATGTTTTTTTCTTCTTAATTTGTATAATTAAGGCAACATTATGACGACTTTATCATTTACACATCACTATGATAAATCACATAAACTATATTCCTAACCATTTTTTATATCATATATATATAGGCATGGAACTTATGGAAAGAAGGAAACAACATCCAATTGCTTGATGCTTCAGTTACAAACTCAATCTTGAGTAATGAAGTAATAAGGTGTATAAAACTTGGGTTATTATGCGTACAAGAACAACCAGAAGACAGGCCATTGATGTCATCAGTAGTACAAATGTTCAATAGCGAGATCAGTTCTCTGCCTCCGCCTAAGCAACCTGGATTTGCTGTAAAAAAGGGTTTAGCTGAAGTACTCTCTTCATCATGTAATCATGATTCTTATTCTTGTGATGACGTGACTATAACTGTCGTTGAACCTAGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK74688.1	6.2e-53	uncharacterized protein A4U43_C03F9120
Swissprot	Q39086.1	1.5e-40	S-domain-1 (SD1) receptor kinase 7
trEMBL	A0A5P1F8I1	4.5e-53	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G65790.1	51.27	3e-43	171	ARK1;RK1	receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00163	AT1G65790.1	158	71	2	28	179	686	843	51.27	3e-43	171
AfisC1G00163	AT1G65800.1	158	70	2	28	179	690	847	51.90	1e-40	162
AfisC1G00163	AT4G21380.1	158	74	2	28	179	693	850	49.37	2e-39	157

Ortholog group

Species	Genes
Allium cepa	g291249.t1
Allium fistulosum	AfisC1G00163
Allium sativum	Asa1G04079.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	15	131	41.0	1.2e-10
PF11883.5	DUF3403	Family	134	179	41.2	1.2e-10

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000302	P	response to reactive oxygen species
GO:0042742	P	defense response to bacterium
GO:0005773	C	vacuole
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0012501	P	programmed cell death
GO:0009506	C	plasmodesma
GO:0009751	P	response to salicylic acid
GO:0009875	P	pollen-pistil interaction
GO:0031625	F	ubiquitin protein ligase binding
GO:0046777	P	protein autophosphorylation
GO:0071215	P	cellular response to abscisic acid stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network