result

Gene information

Detail information of AfisC1G00231

Location

Gene	Chr	Start	End	Strand
AfisC1G00231	chr1	31356753	31359133	+

Sequences

CDS

Protein

Gene

>AfisC1G00231
TGAGATTAACAATCCAACAGGGCAATCCAGGTAATTTCACCCATTCTCACCCTTTCCAATTACAAATCGCTTCCTCTTATTTATTTGGAGCTGGGCTAGAATGACTCCCAGTGTTCTATTTTCTCTCATCTCTCAAATTTCTCACCATTTTTAACTACACCGATCATACATTAATTCTACAAACTATACCTGCGATCAACAATGGAAAAGGGAAAGGGATTGAAACTGTTTGGGGTTGATATATACGCTGCAGTTGCTGAAGATGAGAACGAGATCATGCGAAAAAGCAAAAGTTTGGGAGATCTTCAATCCTGTGATAGGAACAAAAATCAAAGTGGGTATTCGTCGGATGGTGCTTTGATTGAGAAGTCCAAAAGAAGAATCAGAGAGGAGAAGAAACGAGGTAAATTACTGAAAATTTCCGGTTATTGTTAAATATGCTATATTATTCTATTTAAATTAAATTAGTTTTTTGATTTTTTTTACGTTGATGCTAGTTATCTAATTGCATGTGGCTGAGTTAACTTGGATTACGTATAATAATTTCATGTATATATGGATCATTCTGTTTGAGAATCATACAGTAATTTGTGACTTATTAAGGGATGCATTGTAGAGATGTAAGAAGATTAAGGAATCGGTAATAATTTGACATGGAATTTTAATTTTGTTGTGTTTAATCATCTGAAACAGAAGATTTGTCTACGATTTCTAACAATCATAGAGTTGGATGTTGGATATATGCAAACTTATTGGTTGTGTTTTAGCACGACCACATTGAAATGCTACTTTAGCTGGAAAATAATGATGATATGTTTTTTAAAGCATTGCATGCATTTTTGATCTATACCATCCTTAATATATTTTTGTTATAGGAATGGAATGGAATTTTCTTATATATAGACACATTTCTGTTTTTGTTTTACATATTAAATGTCAATATAGGATATAGCTTCTTAACATTAATATTTTGAACTGATGTTGTGATATGTACAATCGAACGAACATAAATAATAAGAAATAGTGATGAAAAATGCAACAAAATCAAAAAGGGACTTAAAATTACATTACTAATTTTGTCATGACAAGCAAAAATTGTACATATTCATCTGTAATTATAAAAGCCAACAATCACTGATAATGCTAGTAGGTTCATTTTTTTATTTAAATAATAGTCAAGTTCAAAACAAAAATAGTAATCATATTTAAAGAATTCAATCTTTGCTAATACAGGAGTGCCATGGAGTGAAGAAGAACACCGCAAATTTCTTATTGGGCTTGAACATCTTGGAAAAGGGGACTGGAAGGGAATTTCAAAAAGTTTTGTGCCAACAAGAACTCCAACTCAAGTAGCAAGTCATGCTCAAAAATATTTCCTTAGGCAGAGTAATCAAAACAAGAGAAGAAGGAGATCCAGTCTCTTTGATGTAGGAATCAAAGATAATGTAATTAACCCTTGCTTTTCGCAAATTCCTATTTTTATTTATTAAGAAATGAAGAAATCTCATGTTTAATAATGCAATTTTGCAGGCTGCTCTTAACCAATCTGAATTCTCCACTGAAGTGCTTTCTGAGCAAATTGATGCAGTGCCTAGAAGAACTAACGTGGTAAAAATTTATACACAAATGAACTTATAGTATCATACTACACTCTTTTGCATTGATAAAATTAACTATTATAATTTTACTTCAGGGCAATCCAACACCCATGTTTTCCCCGCAAGCTAAGTCTCCTGAGCTGGAAGCACCTCCAAAATCATCTTTTCTTGGAAATTACAACTGCACTCAAAGTACACACAGTCTCATGGTAATCAAACTTATTCATATATGTTAATTTGTTTATTAAGACCATGAAATAGCTGTTCTGCTAATATTTGAATTGAAATTCCCAGGGTACGGGCATGACTTGCAACCCTAAGTTCTTGAGCAGTGCAAATTACCCTAATTTTCTCCAGTTATCCTTGGGTAATTGAGTTGAGCATCATGAAAAATTCTCTATTTGATTAGTAGCAACTAGCAACAATCTGGAAATCAGCATTGCACTCGTGCGTTGGCGTAAATTACCTTTACAGCATGCAGCAGGCACAGTATGGGCTACCTAAATTTATTTTACCTTTAGATGTTTTACTGTTGTACTTCTGTTTCTCATATATTACCATTACTATATATAAAATGCCTGCTTGTGAAGCATGTTTTTTAATAAACGTGTTACAAATTAAATAACATGTATTCAAAATATTTATGTTCATTGTCCAAATGATATTTCTTCCTACATCAATTGTGAAGCAAACAAATACATTATTGATGTTCCTACATCAAAGAAACTCAAGCGTCTTTATCTTGTGATAAATGAAATTTGGTCCATTGTTGCCATCCTAAGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248378.1	8.4e-47	probable transcription factor At5g61620
Swissprot	Q9FKF9.1	4.1e-30	Myb-related protein At5g61620
trEMBL	D6MKL4	3.7e-44	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61620.1	52.08	9e-35	143		myb-like transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00231	AT5G61620.1	144	55	3	7	137	34	176	52.08	9e-35	143
AfisC1G00231	AT5G47390.1	150	51	3	5	133	21	160	45.33	1e-29	126
AfisC1G00231	AT1G70000.2	134	50	3	5	133	36	162	53.73	8e-28	120

Ortholog group

Species	Genes
Allium cepa	g422861.t1
Allium fistulosum	AfisC1G00231
Allium sativum	Asa7G00676.1
Arabidopsis thaliana	AT1G19000.1; AT1G19000.2; AT1G74840.1; AT1G74840.2
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	70	114	43.0	3.4e-11

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008270	F	zinc ion binding
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009723	P	response to ethylene
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030307	P	positive regulation of cell growth
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:2000469	P	negative regulation of peroxidase activity
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network