result

Gene information

Detail information of AfisC1G00240

Location

Gene	Chr	Start	End	Strand
AfisC1G00240	chr1	32192425	32196371	+

Sequences

CDS

>AfisC1G00240
ATGAATTCCAATCCCACCAACGTCAGCCAACGAACTCGCAGCCGTCTCGGCTGCCGCCCTCCGCAGCCACAGAAACAACCCGTCATCATCAACATAGATTCTGACAGTGAAGAAGAAAACGAAAAAAACGCAATTTCAGATCCGATGGACGCAAATTGTAAAGCTGAGTCCGAAGAAATTCATGAAAACCGTACAGGTAATGATGATCTTAACCTGGTTCCCGAATCAAGCCCTTCTGAAAATTTTACCGATTCTGTTGAAGAATTAGATGAAGAAGATGATAAATGTTGCACCTTTTCGGAAGTATCCAGCTGTGAAAACAGGGACGAGAGGTTGGTGAAGAAGAAGAGGCTCGGTTTAGAAGTTCTTCTGTCTGCTTCCAAGGAACAAGTGAAAAGTGAAACTCCGAAAATTACACCTGAAGGCAGTAACATTTTTCTCAGAACCCGTTCACGTACTAAAGCTGATATTCCGGAAAAGTGGAAAAATTTGGGTACCCGAAGCAACCCGTATTGTGTAGATGAGGAGGATGATGTAGATTATAGTTCTGAGTCTAATGATGAGAAAGGAAATAGAGAGGATGACAGAGGAATACATAAATTGCATAAGAGGAAAAGCAAAGAAAAAGTTGGGGTGAATCGAAGGGTTAAATTTAAAAAAAGAAATAGGGTTGACGAAAAAAAGTTGGAGGCCGAAATTCTTAAAATTCTAGCAGATAATAACTGGTGCGATGATACAAATTGTCCGGAGAATTCAGTGGACGATGACCGTAGTAAAAGCGAAGAGTTTTCACTTCCTTTGATTTTTTCTTTTGGAGATGACGAACCTGAAGTTGTAGAGAAATCGGAGCATGAAAAAGAAATTGATGAATTGTGGGCTGATTTTGATTTCGCTATGGAAGCATGCAACATTGGATCTTACAATGATGATGAGGGTCAATCCGAAGACATAAACGAACCAGAATTCAAATCTGATCAATCCTTTTTGTGCCTTAAAGGCACACATCAATTAACTCTAGATGAGCAAATTGGGATCAAATGCACGCGTTGCTCCTACCTGCACATGGATATTAAACACATACTTCCACCTTGGGCTTCTTCCACCAATGAAGGATTTACTCATTACACAGACCACCATAATGAGTACTCGTCATTTTTTGAAGACTTAATCAATGATGAAAAACTCGAAACAAGTCAAAATTCACATATATACTCCAAAAACAGTACCAGTACTGTATGGGATCTTGTGCCTGAAACACACGATGATCTCTTCCCACATCAAGTAGAAGCTTTCGAGTTCATCTGGAATAATCTAGCAGGAACCATTCACATAAAGGACTTGAGATCAAACATCAACTCTGAAAAAAATGGTGGATGTGTTATATCACATGCACCAGGCACTGGAAAGACAAGACTATCCATTGTTTTCATCCAATCATACATAAAATTCTTCCCAAATTCCAGACCCGTTGTGGTATCCCCAAGCGGTTTGATCCAGACATGGAAGAAGGAGTTCAAAAAATGGGGTTCAAATGTCAAAGTTCACGACTTGAACGATGATAAAGAACACGCTGCTGCTCAAGAAAATGACGGTTTCGCCCCCAACGTTCAAGATGCACGCCTCCTGAAACTCCTATCATGGAAAATGGGCAATAGCGTAATTTTAATAAGCTACACACTGTTACAAAGATGCTCAGAGTTAAGTAAAATCATTCTAGAAAAGGCAGGTTTGGTTGTTTTCGACGAGGGGCACACTCCTAGAAACGATCAGAGCTGCATTTGGAAAACTCTTATGCAGCTGAAGACTTTGAATAGAGTCTTACTTTCTGGAACTCCTTTTCAGAACAATTTCACTGAACTTTACAACACTTTGTGCTTGGTGAGGCCTAAATTTGCAGAAAAATTGTCTACCTTGGCAAATAATAGTGCAAAATCCAAATGGGAAGAACTAACAAAAAGTGGCTACACTTACGATAACGATATGAAGCTCAGCATAGAAGAGGTTAAGTCTACTATCAGCCCATTTGTGCATGTTCACAGCAACGAAATCCTTGATAGAACCCTCCCTGGTTTAAGTAAATGTGTAGTTGTACTCAACCCATGCGAATTACAAAAGACCATGCTCGAAAAAATAAAGGGTTTGAAGTGCAAATTCTGGCTTGAAAATGACTATAGAAACTCTTTGATTTCGATACATCCTTCTTTAGCCATGACTTTCTTGTCAGAAGAAGAGAAGCTACAGTGCAACTCTGATATGTTAGAAGAAGTTAGATTAAACCCCGACAAAGGCTCGAAAACCAAATTCGTGATCGAACTCATTCGACTATGCGAAGCACTGAAAGAGAAAGTGATAGTCTTTTGTCAATATCTAGAGCCATTAGACTTGTTAGAAGAGCAGTTAAGGAAGTTATTCTCTTGGAATGATGGTAAAGAAATACTTAAAATGCATGGAAAAATTCTAGCGAAAAATAGACAGTCTTTGATCGATGATTTCAACGATGATATGAGTAAATCGAGAGTTATGTTAGCATCAACGAGAGCATGCTCAGAAGGAATAAGCCTTGTAGGTGGTTCTAGAGTGGTTTTACTCGATATATTGTGGAACCCTTCTATAAGGCATCAAGCTATAAGTCGAGCTTATAGGATTGGACAGAAGAGGTTTGTGTATGTGTATCAGTTGGTAAGTGATGGAATGGGAGAGAAGTATAAGTATAATGTGCAAGCTACTAAGGAGAAAATATCGGAAATGGTGCTTTCGAAGAAGAACGATGGTGGGAAACCGTGTGAGAATGACATGGTTTTGGAGGAGATGATGAGAAATGGTAAGGTTAAGGATGATTTTTGCAAGATATGCTACTTGACCGATGAAAATAGTTATGCATTTGCTTATGATGAAGATGGTTTGGGAATATAG

Protein

Gene

>AfisC1G00240
ATGAATTCCAATCCCACCAACGTCAGCCAACGAACTCGCAGCCGTCTCGGCTGCCGCCCTCCGCAGCCACAGAAACAACCCGTCATCATCAACATAGATTCTGACAGTGAAGAAGAAAACGAAAAAAACGCAATTTCAGATCCGATGGACGCAAATTGTAAAGCTGAGTCCGAAGAAATTCATGAAAACCGTACAGGTAATGATGATCTTAACCTGGTTCCCGAATCAAGCCCTTCTGAAAATTTTACCGATTCTGTTGAAGAATTAGATGAAGAAGATGATAAATGTTGCACCTTTTCGGAAGTATCCAGCTGTGAAAACAGGGACGAGAGGTTGGTGAAGAAGAAGAGGCTCGGTTTAGAAGTTCTTCTGTCTGCTTCCAAGGAACAAGTGAAAAGTGAAACTCCGAAAATTACACCTGAAGGCAGTAACATTTTTCTCAGAACCCGTTCACGTACTAAAGCTGATATTCCGGAAAAGTGGAAAAATTTGGGTACCCGAAGCAACCCGTATTGTGTAGATGAGGAGGATGATGTAGATTATAGTTCTGAGTCTAATGATGAGAAAGGAAATAGAGAGGATGACAGAGGAATACATAAATTGCATAAGAGGAAAAGCAAAGAAAAAGTTGGGGTGAATCGAAGGGTTAAATTTAAAAAAAGAAATAGGGTTGACGAAAAAAAGTTGGAGGCCGAAATTCTTAAAATTCTAGCAGATAATAACTGGTGCGATGATACAAATTGTCCGGAGAATTCAGTGGACGATGACCGTAGTAAAAGCGAAGAGTTTTCACTTCCTTTGATTTTTTCTTTTGGAGATGACGAACCTGAAGTTGTAGAGAAATCGGAGCATGAAAAAGAAATTGATGAATTGTGGGCTGATTTTGATTTCGCTATGGAAGCATGCAACATTGGATCTTACAATGATGATGAGGTATCTTGAATTCGTTAATCCCAAAATTTAACAAATTTTATGAATTTAATTTGATCTCTCGTCTTTCCCAAGTTTGTTAATTTTTACAAGTCTTCAAGCATTTATTATGTACAGTTGTTAATGTAGGCAAAAGTTGAAAAGGTTGCTAGTTACTTAATAAATTGGATATTAAATATTACTGAATGCAAAATGAATTTTGCCTAATATTCCGTAAGCAATATTTTTCCTATGTTTATTAATTTTGTTATACAATGTCAATGAATATAATTGTCAATCAAGACTAAATTTGAAACAAGCTCGTGTTACTAAAGACATAAGGGGAAAAAAAGGAAGATACGATGAATATGCAAAAGGTATCATTATTTAATATCTATGATCCTTATGCATCAGTGGTTTAAATGCTTCTTGATTAAATGAATAAACATTATGTAACATTCAGTTTTCAACAGAAGCATATATAATATGCATGTCCAATTTTTCTATTGCAAACCCTGGTGTTTTCTTTGTCAACAATCCCAGCTTTCACATGCATTACAACTTCTGTCAAAGATGAAAACTTGAACTATCTGCGTCGCTCTCTAATGATGCTTATGCAATTTTTAAACACATATGGAAATTAAACTATTCAGTACATGCATTTGGCAGTAATTAGAATGCTTTAGAAGTTAGGACAATGTTCAGTAGCTACAAAGCTGATCTTATCCGCTATTTCAATCAGTCCGTAGTAGTTATAAATTGTTCTGAAGGGGTATTTATGTACTTTAAAAGCTTCACCTAACTGTTTGCTTTATAATAAAAGATGCAGCAAACCTGAGTTTCTTTACTTTGTAGTAATTTCATTTTAATATATATGTATATTGCACCATATACCAGATTCAATATATTTCAAGATTAGAAAATATATATACTTAATATGTTGTTCATCTTCTAAACATTTTACTATGCTATACAGGGTCAATCCGAAGACATAAACGAACCAGAATTCAAATCTGATCAATCCTTTTTGTGCCTTAAAGGCACACATCAATTAACTCTAGATGAGCAAATTGGGATCAAATGCACGCGTTGCTCCTACCTGCACATGGATATTAAACACATACTTCCACCTTGGGTACATACTTCTTTCAAATTCAATTTTTTTTAAAAAAAAACTGTTATCTTTACTCTAATTATGATTTTTCCTAATTTGACAGGCTTCTTCCACCAATGAAGGATTTACTCATTACACAGACCACCATAATGAGTACTCGTCATTTTTTGAAGACTTAATCAATGATGAAAAACTCGAAACAAGTCAAAATTCACATATATACTCCAAAAACAGTACCAGTACTGTATGGGATCTTGTGCCTGAAACACACGATGATCTCTTCCCACATCAAGTAGAAGCTTTCGAGTTCATCTGGAATAATCTAGCAGGAACCATTCACATAAAGGACTTGAGATCAAACATCAACTCTGAAAAAAATGGTGGATGTGTTATATCACATGCACCAGGCACTGGAAAGACAAGACTATCCATTGTTTTCATCCAATCATACATAAAATTCTTCCCAAATTCCAGACCCGTTGTGGTATCCCCAAGCGGTTTGATCCAGACATGGAAGAAGGAGTTCAAAAAATGGGGTTCAAATGTCAAAGTTCACGACTTGAACGATGATAAAGAACACGCTGCTGCTCAAGAAAATGACGGTTTCGCCCCCAACGTTCAAGATGCACGCCTCCTGAAACTCCTATCATGGAAAATGGGCAATAGCGTAATTTTAATAAGCTACACACTGTTACAAAGATGCTCAGAGTTAAGTAAAATCATTCTAGAAAAGGCAGGTTTGGTTGTTTTCGACGAGGGGCACACTCCTAGAAACGATCAGAGCTGCATTTGGAAAACTCTTATGCAGCTGAAGACTTTGAATAGAGTCTTACTTTCTGGAACTCCTTTTCAGAACAATTTCACTGAACTTTACAACACTTTGTGCTTGGTGAGGCCTAAATTTGCAGAAAAATTGTCTACCTTGGCAAATAATAGTGCAAAATCCAAATGGGAAGAACTAACAAAAAGTGGCTACACTTACGATAACGATATGAAGCTCAGCATAGAAGAGGTTAAGTCTACTATCAGCCCATTTGTGCATGTTCACAGCAACGAAATCCTTGATAGAACCCTCCCTGGTTTAAGTAAATGTGTAGTTGTACTCAACCCATGCGAATTACAAAAGACCATGCTCGAAAAAATAAAGGGTTTGAAGTGCAAATTCTGGCTTGAAAATGACTATAGAAACTCTTTGATTTCGATACATCCTTCTTTAGCCATGACTTTCTTGTCAGAAGAAGAGAAGCTACAGTGCAACTCTGATATGTTAGAAGAAGTTAGATTAAACCCCGACAAAGGCTCGAAAACCAAATTCGTGATCGAACTCATTCGACTATGCGAAGCACTGAAAGAGAAAGTGATAGTCTTTTGTCAATATCTAGAGCCATTAGACTTGTTAGAAGAGCAGTTAAGGAAGTTATTCTCTTGGAATGATGGTAAAGAAATACTTAAAATGCATGGAAAAATTCTAGCGAAAAATAGACAGTCTTTGATCGATGATTTCAACGATGATATGAGTAAATCGAGAGTTATGTTAGCATCAACGAGAGCATGCTCAGAAGGAATAAGCCTTGTAGGTGGTTCTAGAGTGGTTTTACTCGATATATTGTGGAACCCTTCTATAAGGCATCAAGCTATAAGTCGAGCTTATAGGATTGGACAGAAGAGGTTTGTGTATGTGTATCAGTTGGTAAGTGATGGAATGGGAGAGAAGTATAAGTATAATGTGCAAGCTACTAAGGAGAAAATATCGGAAATGGTGCTTTCGAAGAAGAACGATGGTGGGAAACCGTGTGAGAATGACATGGTTTTGGAGGAGATGATGAGAAATGGTAAGGTTAAGGATGATTTTTGCAAGATATGCTACTTGACCGATGAAAATAGTTATGCATTTGCTTATGATGAAGATGGTTTGGGAATATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263134.1	8.1e-216	SNF2 domain-containing protein CLASSY 3-like
Swissprot	F4I8S3.1	5.0e-154	Protein CHROMATIN REMODELING 31
trEMBL	A0A5P1F4K0	5.9e-216	Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05490.1	42.08	3e-161	566	chr31	chromatin remodeling 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00240	AT1G05490.1	732	363	16	266	947	669	1389	42.08	3e-161	566
AfisC1G00240	AT3G24340.1	720	369	13	260	952	429	1120	41.11	1e-147	521
AfisC1G00240	AT3G42670.1	716	390	20	291	944	548	1241	33.80	1e-95	348

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	450	716	82.0	3e-23
PF00271.28	Helicase_C	Family	767	883	58.5	6.7e-16

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0000724	P	double-strand break repair via homologous recombination
GO:0004386	F	helicase activity
GO:0006306	P	DNA methylation
GO:0006325	P	chromatin organization
GO:0007049	P	cell cycle
GO:0016246	P	RNA interference
GO:0031981	C	nuclear lumen
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032501	P	multicellular organismal process
GO:0032991	C	macromolecular complex
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0042221	P	response to chemical
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044702	P	single organism reproductive process
GO:0044767	P	single-organism developmental process
GO:0048522	P	positive regulation of cellular process
GO:0048856	P	anatomical structure development
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0060147	P	regulation of posttranscriptional gene silencing
GO:0060966	P	regulation of gene silencing by RNA
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:3.6.4.-	Homologous recombination	ko03440

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network