result

Gene information

Detail information of AfisC1G00402

Location

Gene	Chr	Start	End	Strand
AfisC1G00402	chr1	60697626	60699634	-

Sequences

CDS

Protein

Gene

>AfisC1G00402
ATGAAAGAAGAATCAACGAATCACAGATGGTTAGCTTATTTAAGTCAATCCAAACGGTAATACTACACTGAAAAAGATAAGTTCACAGTTTGCAAAATTAATGCAGTAAAATATAAACAGGCCGACCCTTTGATTTCATAAAAATATTGCAGCTTAGGAAAAAAAGGCTAAATTATTACATGTAAATTTGAACTTAAAATATACTGCTTCCAACGAATATATTTGTCAAGAAAATATACAAAATGTAGCACAGCCCAAGCAGTGGTACATGTTTTGATAAAATTAAAAATATATATAAACAAAATAGGGTATACAGTCTCCGCTGTAATGAAGCTGAATTAACAGCCATGGCATAAGAACAATGAATCAATTATGAAGTCTGTAACAATTTAAAGCAACTACACTAGAATGTATTTTGTTTCGTGTAATGTTTAAACTTGAGAATTTATATTTCATTTTCTTAGATACATCTGGTAGACCAAAACCAAGTCCTATGTTGAACCGATTTAATCCACTAAGATGGAGGAACGATTCCTGGAATATAATATAGACAAATAGAAGCTGCAACAGATAATTTTAGCGGGACCAACTGTCTTCCAAAAGGATTCCATGCTGCTGTTTTGTACAAAGCTCAGTTTGGGTTTAGTAGTTATGCTGCTGTGAAGAAACTGGATATTAAGAATCTGATATGTGAGAGAGAATTTGAGGTGTGTATATTTCTCTTTTCATATGTAGTGTTCATTTAACTTCTTTATGTATGTATGATTTGTTGGTATCTTTGAATATTTTGCAGCATGAGATTATGTTGCTTAGTAATATCAAGCATCCAAACATAATCCCTCTAATCGGTTTTTGCGTTCATGCAAATGCTCGACTTATTGTTTATGAGTTCATGCACAACGGATCACTGGAGATGAAACTTCATGGTACATTTTAAAGTACTTGATTATTTTTCTATCTAGTATGTGTTTCATTTAATGTGAAATTTTATGCATTTTTTGGCATTTTCAGGGTCTTCTCATGGTGCAAACTTACCCTGGCATATTCGAATGAAGATTGCACTAAACATAGCAAGGTACTTATCAACACTAAGCAGTCTTCATATTTTGTATTCAGCTGTAAAAAATAAAAACAAAAAACAAAAAATAACACAAAACAAAAGGGCAAATTTTGTATAAACAAGAAAAGTTAATTCTTTTTTCCTTTTTAATTTTGTTCTTTAACTTTAAAACATGTTTTCTCAATATTTATTCTAATGATTTTTGTATGTTTAACAAGATTAAGAACTTAGGAAATGCACAAAGGGCATCCTTACTTTTGACAACAATTTTTATCCCGTTATATTTTGTTAAATTCCCTTAATTATTTGTTTTGTTATAGTTTCATCTTTGCATGTGTAGAAAAAAGAAGTTATCATCCCATCCCTTTATGATCAGAAGCATTATGTTTGCACAGAGGACAAAAGAGAAGATTATGTAAGGCATCTTCATCTAATCTTCTTTTTTGCTGGCTGATTTTAGACAATAGTAGAGGATAAATACGAAATATATCATGTAACCCTGTCAAATTTTTGTTTACATCTTTGGTGTGTACTGTCAAATTTCTTCAGAGTTCATGACCATTTATTTCTATATGCAGGTTTCAGTTTCAGTAACTCCGTAGATTTCAGTTTCAATAACCTGGTCAAATTTTTGGCTTACATTTTTTGTTTGTATCATATCTCTACGGTTTAGATAGTATTAGTGTTATATTGGTGCTCTTTCGGCTTTTTGTATGATATTCATGATATCAGTGTTATATTGTTGCACTTTCAGTGTTATATTTATGCTATTCGATGTAGTTTTATTGTGTATTCCGCGGTCTAAACAGTTTCAGTGTTATATTCATGTGCTCTCAGCTTTATGTATGATATTTGTGTTATATCGGTGCATTTTAGTGTTATATTGATGTTATTTGTTGTAGTTTTTATTATGTATTCTACGGTTTATACAGTTTTAGATTTCACTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT78428.1	3.5e-29	hypothetical protein B296_00019370
Swissprot	Q9C7S5.1	3.0e-17	PSY1 receptor
trEMBL	A0A427AQD6	2.5e-29	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G80640.2	47.15	2e-25	111		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00402	AT1G80640.2	123	63	2	21	142	142	263	47.15	2e-25	111
AfisC1G00402	AT1G80640.1	123	63	2	21	142	142	263	47.15	4e-25	110
AfisC1G00402	AT4G32000.2	124	67	1	19	142	121	243	45.16	1e-23	106

Ortholog group

Species	Genes
Allium cepa	g537905.t1; g537907.t1
Allium fistulosum	AfisC1G00402
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	53	153	51.6	7e-14

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000380	P	alternative mRNA splicing, via spliceosome
GO:0001653	F	peptide receptor activity
GO:0003729	F	mRNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0005777	C	peroxisome
GO:0005618	C	cell wall
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0006468	P	protein phosphorylation
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009809	P	lignin biosynthetic process
GO:0009826	P	unidimensional cell growth
GO:0009910	P	negative regulation of flower development
GO:0010043	P	response to zinc ion
GO:0010223	P	secondary shoot formation
GO:0010363	P	regulation of plant-type hypersensitive response
GO:0010452	P	histone H3-K36 methylation
GO:0016116	P	carotenoid metabolic process
GO:0016621	F	cinnamoyl-CoA reductase activity
GO:0030154	P	cell differentiation
GO:0031062	P	positive regulation of histone methylation
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042800	F	histone methyltransferase activity (H3-K4 specific)
GO:0042803	F	protein homodimerization activity
GO:0045851	P	pH reduction
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048046	C	apoplast
GO:0048236	P	plant-type spore development
GO:0048481	P	plant ovule development
GO:0048658	P	anther wall tapetum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network