result

Gene information

Detail information of AfisC1G00409

Location

Gene	Chr	Start	End	Strand
AfisC1G00409	chr1	61343391	61348808	-

Sequences

CDS

Protein

Gene

>AfisC1G00409
ATGGCATTGTTGGTGAGCAGGCAGGGGCAAAATAGGAACAATCAGCAGCAGATAGACGCAGGAAAGTACGTTAGGTACACACCTGAGCAAGTAGAAGCTCTCGAAAAGGTGTACAGTGAATGCCCAACACCTAGCTCAATTCGAAGACAGCAACTCATTCGAGAGTTTCCTATCCTGTCTAATATCAAGCCAAAACAAATCAAAGTTTGGTTCCAGAATCTAAGGTATTATAAAGCTCAAACATTTATCATTTTTAAAATTTGCTTTTGGTTATAATTTTACCTGTTTGAATTGATCGTATATAAATTCTAGTTTTCCTTCTAATCCTATTATTGTTTCGGAAGTATTCTATGAAAAACAGTATATTTTAGCTCATCATACGACTTATTCCAGTCAACTAAACTATTGTACAATAGCTCCCTTTTCTATTAGTTTGTGTTTTCAAAAATATTCATGTAAAAAGAAGGGTATGAATTCCAGTTATTGAAGCAAATAAATCCTTCGTGCAAAAAAACATTATTTTCATACTATAGTGTGGAACTTGAATCTTGAGTGAAATTGTATATAACGCTTTACAATTTACACATAAATTTCGCGAGAAACAAAGAAAGGAGGAATCTGATCTTCAGAATGTGAATAGAAAGTTAGATGCAATGAACAAGCTATTGATGGAGGAAAATGACCGCCTTCAGAAACAACTGTCTCATCTTGTTTATGAAAATGGCTACATGCGCCAACGAGTGCACACTGTAAGAATCATATATTCTTTACCATTTTCTTCAAAACATGAAATCTTAGTATTGTTAAAAAAATATTATTCAATTCAATGTCTAAGGCAAACAAGTTACTTGGTTCATATACTAATACGAACATTCTGTTGTCATATCACATTGATTACAAGTGAACTAAATAAAGAGTAAGCAAAATTTGTTATTGCTTTGTAACAGTACTGTTCTGTAACTTTATTCCAACTACATACAGGTTAATGTAGACAATTTCTAACGCCCCACATTGAAAAATATATATGCAGACTGCTGCTGGTACCACAGATATTATATCTTTAGGTTTACCTAATCCGTATCTACTCTAACAATTATACAGACTATGATAAACTTCATGAGCATTATGAGCAAGTTTCCAAACTAGGAACGATTTGCTCCTCTTAAATATATGTGTTTGTTGCATTGTATAGTTCAACACAGTGCTTTCATATAATATTTGGGCAATGTGTGTTATGCTGTATACCTCAACACAACTATGATATTAGAGATGACTGAAACTTTATATTTGCCTATGTTTTAGATCCTGTCTAATTATTTCCTTATATCTTGAGAGAAGATATATTAGGAGTAGACCGAAGTATAAGAACCTAGAAGCAAGGTATTAAAACCCAAGTGAGGATATCAATAACCATTGCTACATATATACCCATAGCTATAAACATAGATGAAATTTCCTTATTTTTCTTATGTTTGTGTGTATGTGCTAGGAGCATAATATTTAAGTAGAATTGTATTAAGAAAGGCATCAATCACATTATATTTGAGTTTAGAGATTAATGAATGTTAATCCTCGAAATCGTTAGACAGTTAGCTTTTGGTGCATATATTATAATCTAACGGTATTTTCCCTTAGAGTGTCTTTTTCTTAGTTTTTCATTTAGGTTTGGAACAAGAAAAAGAATAACTGGTTATTCTATTATTCTGTCTTATATCAAGCAAACCATGATATTTCTACATTATTTTTTATGTCCTAACTGCTTATTTGATTATTGCAGATGTTAGAAGAAAATATCAAAAGCAAAGCAAGATGAACTCAATTGTTTGACTGGCCATAGCTATAAGTAAGTTGTTGATACAAATATATATGAAATATATGTATGGACATTAGAAAAGTAGCTCGAACGATATGTATGAAATACTATGTATGGATATGGGAAAAATTGTTCGAATGATATGTATGAACATGCCAAAAGTTCTTTGAATGATATGTATGAAATATTGTGCTTTAATTCATATATTTTTTGTCAGTGAAAATCTTTTATGCTTATATGCAAAGAAAAAATGGGTAAATTGATATTATATATGGGACAAATTGAAACAGCAATAGATAAAATCTATAAATTAATATTACATTTAATAGCGTTTAAAAAACGCTATAACCATAGGAATATGAATAACAAACGCTATAATATAACTAAAAAACGCTATAGTAATATGCAAAAAAACGCTATAGAAATATGTAAACCAGTGCTAAAAAATGCATACCAAACGCTATAAAATATGCAAGGAAAACGCTATAGAAATGTGCAGTTTAAACGCTATAGGAAGTAACATGAGATAATATTTTCTATAGCGTTTTTGCTTAATAGCACTGAGAAAACGCTATAGAAAATTTATTTTGCATAGCGTTTTCATTCATGCTATTTAAGGTTTATGGTCTACCATAGCATGTCGTTCCAGAGCATTCTCTGAAACGCTATGGTAAACTATAATAGCGTTTTTCAAACGCTATAGAAGCCTCAGTTTGTTGTAGTGATTTTAAAGTTTCCTATGAAATTCAAAGGTACCTGATTACTTAAAATTTTATCTTTCCAAAAACTTATTTACTTTTCCACCAAACCATCTTTCTTAAAACATGTCTTGCTTGTTCTTAAAACATTTTTCTTTTTTCTTGACTTAAAAAAAATGTCCTCGCATGTTTTCCAAATATCCTTTTTTCCATAGATTTTCAAATTTACTAAAACTGGAGTAGATAAGAACAATTATTTTATCAAAAATCTCTTAAATTTCCTACTCTTCCAATTACTTATCCTTGAAGGAGTTTCTAACTTACTACACTTAATGGTTTTATACCTTAATGTATTGGAATTACTTTCTTTTATGAGAAACCATTAACGCTAAAACCTTCAATGAATCCTTTAAAGGAGGATTTCATGTTTATGTGAAATTATAAGGATTTATTTTATATTTTATCGAAATAGACTATACAAAATATGGTGCTTTCCATACCTTGTACATCTCTTTCATGTATTCCTTATAACTTGCACCAAACATCTTTATATGTGATTCATAGAAAATTATTTCATTATTTATTTCATTCCAATAGATTAAAGTATGTTTACTCTATATTCACTTACATAAGATACTTCCTACTAAATTTATTAATTTAACGTACATTATTTTTCAAAAGAACACATTTTCAAAACTGCTTTATAACTAGAAAATATTTTCATGTACTTATTTAAATAATAAGTGTACGTACAAACCACTTTAGAAATTATCTCCAAAACTCATTTGGGTCAAAACAGATGTTGCTTAAAACACCATTACTACAACCCAAAAATACAAATATATGGATTCAATTAAAATAAATATTAATTAATCCCATATGATATGTAAAAACATTTACTTTAGGAGTCACCTACTATAACAATAAACTCATAGTCTATGCTTCCTTTATTTTTACTAAAAACATCTATTACAACACTAAATGTTGTAATCTATGGTTTCGATACTTAACACACTCTAGGTTTTTAAAATCTTTGTTTATCTACAAGGAAACTAGCGAGCTATACATGCTCTATAATTCTTCAAAAAGAATTTCACTTTTAACAAAATTTACATCATATAAAAACCAATTTAAATTTCATACCACTTGTTTTTTTCAAAAACCAAATATTTACTTCCTCAAATATATTAACAATTATATTTTTCAACTTTTCAACTCCAAATGTTTCATTTTATTGGGCTAGACATAAAGTGGATTTTCTTCTTACTAAAACCTCTTATTCCTTCCAAAATAAAAACACTCTCCCTACTATCCCTAGGGAACTTCCCCACTTTCTATAACATATGGATACCAATCTCCACTCAAAACATGGCTTATTTGTATGCTATAAATCGGTAATAACATAGGGCTCAATAAACTTGGGTCATCCCAAACCCAACTAGCAAACTATGCACAAATATACTTCTTAAAAACTTTCCATATGTTAAAATTTATAATTGGGGACTAGTTGGATTTTAGTACATAATATATTTATATTTTATTCAAAAATACAAATACGTTCACTCACTATCTACCTAGGAATCCTAAACCTAGGCTCTGATACCAAATGAAACAACACGAATTCTAGTGGGTTCGGATTTTTCGCAAAAATGCTAAAATCCAAGCCCACTAAAGCCCAAGTTGGGTTTCTGGTATTCTGCAAATAGGAAAAGACAAATATATCAGAGCTCAGATAAATATCTCACAACGGAACTGACTAAAATATAATAGTAAGTAAATACTCACCAATATAATAAAGCTTTCTAAACAAGTGTCTCAAAGCTGGAAAGTCTTTGCCATCTACCTAACCTGTAGGATGTTATGAGGAGGGGGTCAGAACTAAAGTTCTGGTGAATGGACAAATTATACACTTCTAAGCTTAATTCTACATATACCATTTTATTTCCATTTACTGTTATATTAGGTTCACTGGGTTTATAATACTCTCGCCTCTGTGCATGAATCGTGCCCATCTACTCCCTAGTAGATCAAAACCTAATAACTTATATATACGTAGCTATATGCCCAATGACCACATCGGTCCTAGATACTACCCATAGTACCTTCAGTATCCTCCTCGTAAAGGACTCCATCGTCTTGCTTCTATGGCGTTCTGTGACTACATCTATAAAGGACTGCCTCATAAGGCCTATAATACAGATGTTTCGTCATCTACTATGAAAACGTAAAACTGCGTCCGCACTAGTCTATACTAATGCTCGGACATCCACAATGTACCACCCAGTGCGTACCTTGAGGACTATATGTAATCGTTCTGTCTACTCCTTGAATCCCACTTAACAAGGTCTACCTTGTACGGAACTCAATCGGGGATTTTCTATGTCTGTAAAGGACTGCCCTATTAGGCCTACAATACAGATATTCTATTTGGTATGTTTCTTTTCTTATCATGGATATGGCCCCACGCAGCCACCCCTTAACTAATCGAAAGACCTCTAAAGAGCTAAGTGATTGTGGCATACTGCAAACAATCTAAACATCCAATTGGTTTCACCACTCATTCAATGTCTCGATAGTGAAAGGTTTATTGAACTGTTAGTTTAAGTCTAGTCTTTCCTGAACTCGCTTCTTGGTTTCGATACTGGCTCGATATTCGCATGCGACTATCCTTCTGGGTCATGCCCACTAAAACTTACTTGCGAGTACTGGGACATACGAATATCATACTCCAAACATCAACCCCTTTTGACTGCCTATAATGGTCCTGCCATGCAAAAAGCAGTCAAGGCATACTCTTTTGATGGAACACCTACAGACCTACCTCCGGAGGACTGCTCCGTTATGCCTACCCCAGAGGGCCATCCTAGAGTACCCTCACATCCCGTTGAAGTCTCGTACTTCCTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	BAM08933.1	1.7e-45	class III homeobox-leucine zipper protein
Swissprot	A2ZMN9.2	7.5e-43	Homeodomain transcription factor HOX33
trEMBL	I0IUI4	1.2e-45	Class III homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34710.1	66.67	1e-47	186	ATHB-14;ATHB14;PHB;PHB-1D	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00409	AT2G34710.1	138	33	2	5	141	7	132	66.67	1e-47	186
AfisC1G00409	AT1G30490.1	123	24	1	19	141	18	128	70.73	1e-46	182
AfisC1G00409	AT4G32880.1	128	26	1	9	136	2	117	70.31	4e-46	181

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	23	73	43.8	1.5e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0009880	P	embryonic pattern specification
GO:0008284	P	positive regulation of cell proliferation
GO:0009733	P	response to auxin
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009965	P	leaf morphogenesis
GO:0010067	P	procambium histogenesis
GO:0010072	P	primary shoot apical meristem specification
GO:0010075	P	regulation of meristem growth
GO:0010089	P	xylem development
GO:0045597	P	positive regulation of cell differentiation
GO:0048263	P	determination of dorsal identity
GO:0048364	P	root development
GO:0080060	P	integument development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network