result

Gene information

Detail information of AfisC1G00432

Location

Gene	Chr	Start	End	Strand
AfisC1G00432	chr1	66762823	66764229	+

Sequences

CDS

Protein

Gene

>AfisC1G00432
TTCCTGTCCTAGGTCCTAGAAATCCATGCATAAGTAGCTTACCTTCTGGCCTCACACCAGAACCCTCATGAGAACCTCTTAAAGATACTCATCATACCTCCCCTCATCAATACCTGTATATAAGACCTACCAAGGATAGGAAGAATAAACTTAATTTTCCTTCTCCTCCATCCTCCTCCTTTCAAAAGTAGCCATGGCTTTCACATCTCTTCCAATCTATCTTGATCCTTTGAATTGGAATCAGGTAAGCTATCTTTTTACTGTAATAAACACTCTTGAATATTCTTAAATCTGTTTAATTCCTTTTTCAGCCTAATCAACAAACCCAAAACGCTGATCAGCAATCACATATGTTCATATCTTCGACAACAAACAACAATGAATCAGCTCAAGAAACCCAAAACCCCAACAACACCTCCTCCATGCCCAAACCTGGGTCCATGGCGGAGCGGGCCCGTCTAGCCAAGATCCCTCAGCCCGAGCCCGCTTTAAAATGCCCTAGGTGCGATTCGACCAACACCAAGTTCTGCTACTTCAACAACTACTCCCTCTCCCAGCCACGTCACTTCTGCAAGACTTGCCGTCGCTACTGGACACGCGGTGGTGCCCTCCGCAGCGTCCCAGTAGGCGGCGGCTGTAGGCGCAACAAACGGGGCAGCAACAGCAAATCTTCTGCTAACAAATCGGGGGCCTCATCCTCAGCAGCCGTGTCTTCTTCTTCTAACTGCTCCACTGCCACTAGCGGCAGTGGGCTTTTGCCCTCGAATTTCTCCCAGTTTCCCCTTTTGAGCTCCTTGCACCCTTTGACCGATCAGTTAGGTTTCAATTTTTCGATGATGCAGCAGCAATCCATCGATGCTAATGAGTATCAGTTAGGTGGAAATATAAATGTACAACAGTTTCCATTTATGGATAATACATCATTAATGAGTGGGATTAACTATGGTAATTTTCATGGAGAGGTCGGGAGCGATAATAATCAGTTAGGGTTTCATATGCCAATGAAAATTTCTAGTGGTGCTACTAATCTAGGGTTGATTACTCAAATGGCATCTGTGAAAATGGAGGATAGTCATGCACAAGGAATGAATTTATCGAGGCAATATCTTGGAATTTCGAGTAATGATCCATATATGAGCGGGTTATGGGATGGAAATGGAAATGGGAATGTTTCAGGGTTTAATTCCGCATCGGCTGGGAACTTACTGTGAATCATCGGGAAATATGGTCATAAGATGCAATGTGGTACATGATAGTTAATTATATAGTCCTAGGTAGGTTTCTTGGTTTCATTTTTCTTGTTTTTTTTTTCATTTTTATTTGGGGTGATGTTTTTTTTTGTTCTCTCTTAATTTGTATGTTATAGTATGGTTAATTATATCTATAAAAATGAATGTGGTGTTTGGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010253200.1	2.8e-47	PREDICTED: dof zinc finger protein DOF3.6
Swissprot	Q9M2U1.2	1.4e-32	OBF-binding protein 3
trEMBL	A0A1U7ZXA3	2.0e-47	dof zinc finger protein DOF3.6

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55370.2	41.82	5e-43	171	OBP3	OBF-binding protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00432	AT3G55370.2	318	120	13	11	269	26	337	41.82	5e-43	171
AfisC1G00432	AT5G02460.1	75	6	0	27	101	75	149	92.00	7e-40	160
AfisC1G00432	AT3G55370.3	214	78	6	11	191	71	283	47.66	3e-39	158

Ortholog group

Species	Genes
Allium cepa	g303432.t1; g357877.t1
Allium fistulosum	AfisC1G00432
Allium sativum	Asa7G00824.1; Asa7G00825.1
Arabidopsis thaliana	AT3G55370.1; AT3G55370.2; AT3G55370.3
Oryza sativa	LOC_Os07g13260.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	46	101	110.8	2.4e-32

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010154	P	fruit development
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process
GO:2000032	P	regulation of secondary shoot formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network