result

Gene information

Detail information of AfisC1G00527

Location

Gene	Chr	Start	End	Strand
AfisC1G00527	chr1	83758291	83759487	+

Sequences

CDS

Protein

Gene

>AfisC1G00527
TCACTTACATAATCTTAGGCTAGTTGCTTTGGCGCATTTTCTCTTACTTTCCATATATTAAATGCATAAAGTTTACACAGTAGCTAAATGTGATTAAACAATTCAACCTTTTGCAATATATAACTAGCTTGTCACCACAACCAATTTTCTATATTCTCCATCGAGTTATTTTCTTTCCTCTTTTTTATTTCAAATTAAAGAAGAAGAAAATGAAGATAAGATGCGATTTTTGCAACGAAGAAGCAGCATCAGTGTTTTGTTCTGCAGACGAGGCTGCTCTTTGTTCCAGATGTGATTTTAATGTTCATAGTGCGAATCTACTTTCAAGAAAACACAAGCGTTTTTCGATTATTAATCCTTCTTCTAATTGTTCTGATTCCCAATCTCCACTTTGTGACATATGCCAGGTTTGCATCAAATTTGCATTTCTTTTAATTTAGTTAGAGCTTGTTTTTATCAACTTTAGGCTTGTTTCTTTTTGTTTTTTTTCCTCAAGTTTGTTTTCCTTTACCATTCTATCCAAGAAATAAATCTTTGGATGCCATCTTTTCAAGCTATTTCAACAAAAAATTTATTGAACCTTAGCATTGAAATTTTTTTTTATGGTAACAGGAAAAGAGGGGATTTTTATTCTGCCAAGAAGATAGAGCAATACTATGCAGAGACTGTGATATATCAATACACAAAGCAAATGCACATACGATGAAGCACAGTAGATTTCTAATAGGTGGAAACAGGCTTTCTTCAGACCCGATAGCAGAGCCCGAATTACCGCCCGAAACGTCCAGTGAAAGCAATCATCACTGTAATTCTGGATTTCAGGTAAAAGATAATAACAACAGCAGCAGCATATCTGAGTACTTAATCAATTTATTGCCTGGCTGGCATGTAGAAGATTTTCTGAATGATGAAGTTTCATATAACAATAACAGTGATGCTAGTTCGAATCTTACATGGATCGGAACATCTGATGTTGTAGATGAAAAATTTAGTGGTGAGAAATCAAGAAATGATCAGTTTAAAAGGTCAATTTCAGATGTCTTTATGGTGCCTGAAGTTTATGGTATGGGACAAATAAGCAGTACTAAGAAGCCTAGAATGTGTTTTTGATCACTTTTTTTTTAACTGTTTTTATTGACCGATGTATAATCAGTGAGATGCTATATATATTGCTAATTTGTTATGTCAAGAAGAAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_006652591.1	1.1e-46	PREDICTED: B-box zinc finger protein 20-like
Swissprot	Q9LQZ7.1	2.1e-42	Protein SALT TOLERANCE HOMOLOG 2
trEMBL	J3LZZ7	8.0e-47	B-box zinc finger protein 20

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75540.1	47.26	7e-45	177	AtBBX21;BBX21;LHUS;STH2	salt tolerance homolog2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00527	AT1G75540.1	201	70	5	1	167	1	199	47.26	7e-45	177
AfisC1G00527	AT4G39070.1	243	91	6	1	196	1	239	41.56	2e-38	155
AfisC1G00527	AT1G06040.1	228	132	7	1	225	1	217	35.96	9e-29	123

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	3	44	30.6	2.6e-07
PF00643.21	zf-B_box	Domain	58	97	28.6	1.1e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network