result

Gene information

Detail information of AfisC1G00571

Location

Gene	Chr	Start	End	Strand
AfisC1G00571	chr1	89327321	89331365	-

Sequences

CDS

>AfisC1G00571
ATGGAGCAACATCTTGCAATGATAGAGAACAGGTTTGGAGGCGATAGTTCAGATTTTGATGTAGAAGACATGAGGTGCGAAAATCTAACTGAGAATGATGTCAGCGATGAAGAAATAGAAGCTGAAGAGTTAGCACGAAGAATGTGGAAAGATCGAGTCAAACTCAAGAGGATTAAAGAGCAGCAAAAGGTTGCCGCCCAACAAGAATCGAACAAACTGAAACCGAAACAAACATCTGATCAAGCTCTAAGGAAGAAGATGTCCAGAGCTCAAGATGGGATTTTGAAGTATATGCTAAAACTAATGCAAGTCTGCAATGCTCGTGGCTTTGTATATGGTATTATACCCGAGAAAGGAAAACCAATGAGTGGTGCTTCAGATAATATAAGAGAATGGTGGAAGGAGAAGGTGAAGTTTGATAAGAATGGGCCTGCTGCACTAGCAAAATACGAAGCAGATAATTTTGCTGCTGAAAATGCAAAAAGTAACAGTGGCAAGAATACATGTACTCTTATGGATCTTCAAGATGCTACACTAGGATCTTTACTGTCATCTTTAATGCAACATTGCAAACCTCCACAGCGCAAGTTTCCTCTTGAAAAAGGGGTTCCACCTCCTTGGTGGCCTTCAGGAAATGAACAGTGGTGGCTAGATTTAGGGTTGCCACATGGTCAGATTCCGCCTTATAGAAAACCTCATGATTTGAAGAAAGTATGGAAAGTTGGTGTATTAACCGGTGTGATTAAGCATATGTCTCCAAACATTGAAAAAATCAGAACCCACGTGCGAAAATCAAAATGCTTGCAAGATAAGATGACTGCAAAAGAGAGTTCCATCTGGCTGGGCGTTCTAAGTAAAGAGGAAACCATAACTCAACATCGAAGCGAAAATGCATTATCTGATGTCACTGAAAATCTGAACAATAATCAAGGGTTGAGAGGAGAGGATACAAATAGTAGTAACAGTAGGGATATGTACGATGTAGATGGTGCTCTCGATGCAAATAATTCTGTTTCATCAAAATCCTTAAAACGACCACCGGTAACTGCTACTCCTGTTAAAGCTAAGGAGAAACCAAAAAGAATAAGAACCCGAGACAGTTTGTTGATTGCTGATAGAGAAGCTTCAGTGCCTCAAAACAATCATACAAATGAGGAACCAAGAAGCTATATTCCTGACATGAATATCACAGATACAGCAGTTATGAATTACCAAGTCGAAAACACTAACATGGAGAACTATACGAATCCTTCTTTGAACCCTCATGAAAATCATTATATAGAAACCCATCCTAGCGATACCAATAATTTACTGACCATTTCTCAAGCTGATCAGTCATTACTGTTCCCTAATGTTATGAATAATGAGACCCATTTTGGTGGTATACCACTGCAGGTAGGGTATGAGATTCATCATAGCAATATGGAGCAGTTGCCTCAGCCTATTTTGGACCATCATATGAGGGTAGAGAGCAATGATGATATTATTGGTAACGACATGCATCTACTGGATATGAATGGAAATGGAAGTTCAGGTTCAATTGATGGAAATAACCATCATTTAGTTGAAGGTTCATTCCAGAATGATTTGAATCATATCTTGGGCAGTCCGTTTGATAGCTTATCTTTCAATTTTGGTGGGTTAGGAAGTCCTCTAGGCGATATTGATGATTACTTTGTCGATGAAAATGATCTAATGGGATATTTGGGAACATAA

Protein

Gene

>AfisC1G00571
AGGATACAATAATGAATCAAGTACTACTGGTCTAACATTACTCTATCTATTTTCTTTCGATTGCACAAAATTGTGTTGAACAAAATAATGGAAATAAGATCGTCTGCCTCAATTTTCTACAGCAGATGATTTATCGTAGATTCGTTTGGTTTCATGGTTCGTATAGGTAATGATTCTACCATTGATTTTATTCACGGATTAAACTGCTGCTGATTCGATGAAGTCTAAGCGATTATTTTATGATTTGAATGAAATTTGTGTTGGATATTAAGTTAATTAAGTTCTACGGTGTTGAGTTAGTTAGTATTGCTATAATATTTGTCAATAAAGCTAGAAGAGCAGGGTTTTTACCAGGGAATTTGAAAAACAGTCCAATGACCCTCTGAAATCAAGTATTTGGATCCAATGACTATATCCATTCCCTAACATCCATGACGTCTCTTTTTTGGGGCTCTCTAGCACAGTTCTATATTTATTGCAGGTTTTAACCTGGGATGAGAATAGATGTAATTTTAATATTTTTGACCGACTCAGTTTATGGTGGTTATGTATTTTATTTCTCGTGAGTTTACCTGATATTTGTAATTCTTGGATTGTAGTAGATTATTGGTTGAGCTGAGTCGAACAACAAATCCATTGCTCCCCCAATTTCCTTATAACTTATGTTAACATGTGAACTTTTCCAGCTAGAGTATTAGTAAATTGAACGTTTTTACAAAATTGAAAGAAGCACAATAAAGTTTATAACCTCTATTCACATAAATTATTATACGGTATGGACATATGTTAACAATAAGTTGGATCAATGCTGCTGGATACTAGTTTTCCACTGCTATCAACCTGACCCGTCTCTTCATTCAGATCTAATGATTCAGACCTCACAGTATCTTTCTTTGTGTATCCTATCTACAGCTTCTTTGAACTCTTTTTGCTAATTATTTGAAAATCTGTGTTGTGGGATCCATGTATACTCCCTTAGGAGTTCACGAGCATTTTCTGATTCACCTTTGCTTGCATTAGAAAAAAACATACAGTAAAATTTACCTTTAATCTAATGATGCTCCTTAACAGCATGTCACTTGTTGAACTCTTCTATTTTACGAATTTCCTTACTTTGAAAACCACCGTCTTCATTCATCACCAATGATTGCTTCAGGTTACTTAAAACACCAACTGTTCATCACCTTAAAAAGTTTAATGAGCATTGTATGTTGTCATACCCTATGCAGCTCTTCTACTAGTCCTTTGAGGATTGTTTTCAAGTTAGCGGCAACTGAATTTTGCAAGTAGGAGCATCTCCAATATAAAGTCTTAGCTCAAGCTTGTCATTTAAACAAGTGATCGATCAAGTTTCAACTTTCAACATTCCACAGCATGGGATACTTTTTTTGAATTATTTTAGGCATGTGCTAGTACTATTGTGTCATACTCTAGGTGTCAATAATATTTATGTCTGATATCAATAACCAATGTTACTTGGCACATGCATGGACTTGGAGAGCTTCATACAAGACTTCATATTTGGAGCCTTGCGATGCAATTATGTCTATTATTATTGTACAATCATTCTTTCATAATTGAATTTTTGTTTTCCAGTATATTGATGTAGAAAGAGATTGCAAGTTGGTTTAAATATAACCAAATCAACCTTCAAATAAGGCACCATGGAGCAACATCTTGCAATGATAGAGAACAGGTTTGGAGGCGATAGTTCAGATTTTGATGTAGAAGACATGAGGTGCGAAAATCTAACTGAGAATGATGTCAGCGATGAAGAAATAGAAGCTGAAGAGTTAGCACGAAGAATGTGGAAAGATCGAGTCAAACTCAAGAGGATTAAAGAGCAGCAAAAGGTTGCCGCCCAACAAGAATCGAACAAACTGAAACCGAAACAAACATCTGATCAAGCTCTAAGGAAGAAGATGTCCAGAGCTCAAGATGGGATTTTGAAGTATATGCTAAAACTAATGCAAGTCTGCAATGCTCGTGGCTTTGTATATGGTATTATACCCGAGAAAGGAAAACCAATGAGTGGTGCTTCAGATAATATAAGAGAATGGTGGAAGGAGAAGGTGAAGTTTGATAAGAATGGGCCTGCTGCACTAGCAAAATACGAAGCAGATAATTTTGCTGCTGAAAATGCAAAAAGTAACAGTGGCAAGAATACATGTACTCTTATGGATCTTCAAGATGCTACACTAGGATCTTTACTGTCATCTTTAATGCAACATTGCAAACCTCCACAGCGCAAGTTTCCTCTTGAAAAAGGGGTTCCACCTCCTTGGTGGCCTTCAGGAAATGAACAGTGGTGGCTAGATTTAGGGTTGCCACATGGTCAGATTCCGCCTTATAGAAAACCTCATGATTTGAAGAAAGTATGGAAAGTTGGTGTATTAACCGGTGTGATTAAGCATATGTCTCCAAACATTGAAAAAATCAGAACCCACGTGCGAAAATCAAAATGCTTGCAAGATAAGATGACTGCAAAAGAGAGTTCCATCTGGCTGGGCGTTCTAAGTAAAGAGGAAACCATAACTCAACATCGAAGCGAAAATGCATTATCTGATGTCACTGAAAATCTGAACAATAATCAAGGGTTGAGAGGAGAGGATACAAATAGTAGTAACAGTAGGGATATGTACGATGTAGATGGTGCTCTCGATGCAAATAATTCTGTTTCATCAAAATCCTTAAAACGACCACCGGTAACTGCTACTCCTGTTAAAGCTAAGGAGAAACCAAAAAGAATAAGAACCCGAGACAGTTTGTTGATTGCTGATAGAGAAGCTTCAGTGCCTCAAAACAATCATACAAATGAGGAACCAAGAAGCTATATTCCTGACATGAATATCACAGATACAGCAGTTATGAATTACCAAGTCGAAAACACTAACATGGAGAACTATACGAATCCTTCTTTGAACCCTCATGAAAATCATTATATAGAAACCCATCCTAGCGATACCAATAATTTACTGACCATTTCTCAAGCTGATCAGTCATTACTGTTCCCTAATGTTATGAATAATGAGACCCATTTTGGTGGTATACCACTGCAGGTAGGGTATGAGATTCATCATAGCAATATGGAGCAGTTGCCTCAGCCTATTTTGGACCATCATATGAGGGTAGAGAGCAATGATGATATTATTGGTAACGACATGCATCTACTGGATATGAATGGAAATGGAAGTTCAGGTTCAATTGATGGAAATAACCATCATTTAGTTGAAGGTTCATTCCAGAATGATTTGAATCATATCTTGGGCAGTCCGTTTGATAGCTTATCTTTCAATTTTGGTGGGTTAGGAAGTCCTCTAGGCGATATTGATGATTACTTTGTCGATGAAAATGATCTAATGGGATATTTGGGAACATAAGTGAGTATCCATTCATTTATAGTTTTATATATCTGTGTAGTAAAATGATACTATTTTTCCTGAGTAGTTTATTTTAATTACACATTGTATGCTTCAGGGGAATCCTATTTCAACATGAAGCTACTTGCAGGTTTGGCTGGGACATGAAGTTATCAATCGATCACTAGTAAATTGTCTGTACTTGTCAACTTTTGTTTGTTTATTCTGGGTTTTGATGTTCAAAGATCATAGTGATTAAATAGACCAGGTAGTTTGAAGATTTTTTCTTTGTTATTTAAAAAAGAACAACAAAGTACGTATTAAGGAGTTGGCCATTGCGAAGTTTGTGAGGAATATTTCTCTTTTTATGCAAGGAGTTTTCCAGTTGGTTATGTTGGTTGTACAAGGAGTCCAGTTATTTGATTTTTATCCTATATCTACGAGCAATGCAGATTGTTTGAATAATGTCCATCATTTCAGGATATGAAATACTGCTGTGAGTTGTGATTAGATGGAGTATATCAGTAATTTGTTCTAAATTAGACATGCCTTGCTTCTTCAAAATAGAAAGTGAGAATCGCACTTCCAACTGCCAGTTTAACACTTTCAACTATTTAGAAACGCCCAATATAAGTTCAGCAGTCGTATATGATTAGTAAAACCATAACCGACTGATACTTACTGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261648.1	4.4e-185	ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116.1	4.5e-118	ETHYLENE INSENSITIVE 3-like 3 protein
trEMBL	A0A5P1FUD1	3.2e-185	ETHYLENE INSENSITIVE 3-like 3 protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73730.1	48.29	4e-129	458	AtEIL3;ATSLIM;EIL3;SLIM1	ETHYLENE-INSENSITIVE3-like 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00571	AT1G73730.1	557	244	13	22	549	18	559	48.29	4e-129	458
AfisC1G00571	AT3G20770.1	269	94	3	27	292	34	300	63.20	1e-101	367
AfisC1G00571	AT2G27050.1	264	90	3	33	292	40	302	64.02	1e-101	367

Ortholog group

Species	Genes
Allium cepa	g372888.t1
Allium fistulosum	AfisC1G00571
Allium sativum	Asa7G00903.1
Arabidopsis thaliana	AT1G73730.1
Oryza sativa	LOC_Os08g39830.1; LOC_Os08g39830.2; LOC_Os09g31400.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04873.10	EIN3	Family	42	288	414.1	1.6e-124

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009873	P	ethylene-activated signaling pathway
GO:0010182	P	sugar mediated signaling pathway
GO:0042762	P	regulation of sulfur metabolic process
GO:0071281	P	cellular response to iron ion
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14514	EIN3; ethylene-insensitive protein 3	EC:-	MAPK signaling pathway - plant	ko04016
K14514	EIN3; ethylene-insensitive protein 3	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network