result

Gene information

Detail information of AfisC1G00757

Location

Gene	Chr	Start	End	Strand
AfisC1G00757	chr1	125942233	125943922	+

Sequences

CDS

Protein

Gene

>AfisC1G00757
TCATTTGGGACCAAACTCAACCTGGTGAGCGCACCCGGCCATCCATTTCCCATTTCTGACTAATCTCTCTTTTCTTTCCCAATACAGAAACTCTCACCAAATTCAAAACCCATTAAACACAAATTTTACTCTAATTACCCTCGAATTTAGCAAAAAATTAAGCTAAGAAAACGAAGATATGGATTCAGATACGCAGCAAAAAATTTCAGAAACAGTGTTAGCTATCCTAAAATCCTCGAATATGGAAGAAACCACCGAGGCCAAGGTCCGATCCATGGCGGCGAAGCAGCTTAATCTCGACCTCTCAACCCCTGATCGCAAAAAGTTCGTTCGTGAAGTTGTTGAATCGTTTCTCGTAGAAAATGTAGAAGAAAAGGAAGCAGAAGAGAAGGAAGCAGAAGAGAAGGAAGAAGAAAACGAGAAGGAGGAAGACGGAAAGAAGAGCGGGAAGAAAGAGTATGACGATGATGGCGATTTGATTATTTGCAGGGTTTGTGTTTTTTTCACTCTGAAGTTATTGAGAATGTTGATTGCTTTTTAGGGTTTTATTAAGGCTTAATTGCACGAAATCCCTCATTTGGTTTGCATACGGCACATTTGAGCTTCGTGGTTGAAATAGTTGCATTCATGTTATTATGATTCTATGAAATATAATTATACAAATCAAAAATTAGTTTTTTCAAAAGAAATTGAATGAGTGATGACAAGTTTTTAATGGATTTTCTTTTCATAGCTGTCGAACAAGAGAAGAGTGACCATTCAGGAGTTTAAAGGGAAGATGCTGGTATCCATTAGGGAGTATTACGAGAAAGATGGAAAGCAGTTGCCGTCTTCAAAAGGTATGTCTTCCGTGTTTCTAGGCTATATTCGAAATTTGTTGCATTGAGAGTGTCAGTTTGGTTGTTAAATATTTACCAAGGTCGGCTTATCAAGTTTGTCCAAATTCATTTCATTATCTATTGTATATTCTGCTGTTTATCAGTTCTTGCTGCTCGTGTTTTTACATTTCTGTAAAGTTTGGTGTGAATTCTAAGGATTGTTTTAGGTTTAGTTATGGTTCAGTGATGCCAATTTTTATAGTTTAGCTAATATTAGGTATAATACGCGTGATATTAATTTTGGGAGCTAATATTGATGTCTTTATAAATTGACATGCTACTACGTGATACAACTGTTATATCTGTATGAACTGCAATGAAATATGTAAACGCTATGAATGAATGGATGTTGACGAACCAAGATAAAATCAATTCATGGTGGAATTTTTCTTTTTCAAGAATATGCTTCCATTCTTTAAGTTAAAAATTTGACAATTTCTAACATCGTCGATTATTTACACAAGCAGACTGCTTGATATACCATCATCCGCTCAAGTATTTTTTTCATGTTTAATACGATTTTATCAAACAAACATTCCAAGTACTGCAAAACAAATGTGCAGGCGCTACAATCAACCCCTCTTACCGTGACACTTTTCAAATGTGAATTCATTTTTGCTATCTATGTTGCGCTGGACGTAAAAGCAAGATTTCCACCTCTAGTAAATCTCCTTTTGTTTTGATTTATAGCTATGGTGTTGGTACAAAAGAAGTTTCCACCTCCAATAAGCCTCCTTTCGACTTGGTTCAATGAGAAGAAAGTGAATATAAATGACAATAAATTTCAATATAAATAGATACTATAGAAGGTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264132.1	1.3e-28	RNA polymerase II transcriptional coactivator KELP
Swissprot	O65155.1	8.5e-28	RNA polymerase II transcriptional coactivator KELP
trEMBL	A0A5P1ET15	9.7e-29	RNA polymerase II transcriptional coactivator KELP

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G10920.1	56.83	4e-34	140	KELP	transcriptional coactivator p15 (PC4) family protein (KELP)

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00757	AT4G10920.2	139	50	3	13	148	13	144	56.83	4e-34	140
AfisC1G00757	AT4G10920.1	139	50	3	13	148	13	144	56.83	4e-34	140
AfisC1G00757	AT4G00980.1	124	74	1	1	124	12	128	34.68	7e-12	67.0

Ortholog group

Species	Genes
Allium cepa	g168561.t1
Allium fistulosum	AfisC1G00757
Allium sativum	Asa7G00418.1
Arabidopsis thaliana	AT4G10920.1; AT4G10920.2
Oryza sativa	LOC_Os01g50960.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08766.8	DEK_C	Domain	5	59	48.2	6.7e-13
PF02229.13	PC4	Domain	103	139	53.7	1e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0044424	C	intracellular part

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network