result

Gene information

Detail information of AfisC1G00844

Location

Gene	Chr	Start	End	Strand
AfisC1G00844	chr1	137498400	137501607	+

Sequences

CDS

>AfisC1G00844
ATGGATGCAGTAAACATTACTGAGTATGAAAAAGATGATAAAGAAATGTTTGACCTAAATGAAGATATTATCATGGAAGCAGATGATGAAGAAGTTAGCAGAAGCAACAATAGCTCTAGTTGTCAAATTTATGATAATAAAACTACTAATGAGAATGAGAATGAGGAAGGAAGCAAGAAAAATTCACTAGTGAGACAATACAATAGATCGAAGATGCCAAGGCTTAAATGGACTCCAGATCTTCATCGCTCTTTTATTCTTGCTGTCAAAAGACTTGGTGGTCAAGAAAGAGCAACTCCAAAGTTAGTACTTGAGATGATGAATGTGAGGGGACTTGGTATTTCTCATGTCAAGAGTCACTTGCAGATGTACAGAAACAAGAAACTAGACGACTTAGGGCAAGTGAAGTCTCGCACCGTTTCCTCTTCAGCATTCTCTTCCCTGGATAATTATTTTAGAAGAGGAAATACAGTTTCAAAGACACTCACCCAGGAAAGGAATAGCCTGTACTATCTGCAGCACTCAAGAATGCAAAATTTACTTGGCAGATTAATGTACCCTCCTCAACTACCGCTTACCCAAAACAACAGTATAAGACAATTTGAAAGAAATATGGTTAGTCCCAGAATAACAGAGAGGGCTAGTTCAAGTCAAGAAGACATCAGTGACATGATAATCAAGAAAGTATTAAGAAAAACGACTAATTCTCATTTGTTCGATAGAAAAGAAAGAACAACTACATTTGGAAGTTGGAGTAATATTGGAACTAACGAGGTTGGCCAACACTATGAAATAGATGGAACAAAATATGGTTGGAAAGAAAGAAACAAATTCATATATTCTTGTGATGAAAGAAGCAACATGGAAACAACAACATACCCCATGTTTGATGATCAATCTTCCCCTGAGAAACTTATGAAGAATCATGCTATGCATAGCAAACGCAAGTTCAATCACAATTCCAACACAGAAAAATCTACCACTTCAGAGGTAAAAAAGGCAAAGACATTGCAAGAGTACAATGATTATATACCAAATTTGCAGTTAAGCTTAAGGCCTATATCTATCAAAATTAATAAAGACAAGAAAGAAGAAGAATTAGATGATGACGATGGTCTTCTCTCACTTTCGCTCTCCCCTCCGAAATTACAACCGAAGCCCTTTCTAGAAACTTTAAGTTCAGCATCAAAGCCGATAAGAAGCTGA

Protein

Gene

>AfisC1G00844
TATTATCCTTCCCCTCTTCTTCTATTTCTTCACTAGTTTCTTACTTCACTAAGTACAGATATATTTTCTGATTTAAGTTAAAAGAAGAAATAGACTAAGAGGGGGATGGATGCAGTAAACATTACTGAGTATGAAAAAGATGATAAAGAAATGTTTGACCTAAATGAAGATATTATCATGGAAGCAGATGATGAAGAAGTTAGCAGAAGCAACAATAGCTCTAGTTGTCAAATTTATGATAATAAAACTACTAATGAGAATGAGAATGAGGAAGGAAGCAAGAAAAATTCACTAGTGAGACAATACAATAGATCGAAGATGCCAAGGCTTAAATGGACTCCAGATCTTCATCGCTCTTTTATTCTTGCTGTCAAAAGACTTGGTGGTCAAGAAAGTATGCATTTCTTTATTTCTCATTGCTGTACCCAAGAATATTTTGCACTTTCTGATTAATTTGTAATGACAAGTAACTAAAAGGTACAAATTATGAATGATGCATGTAGGAGCAACTCCAAAGTTAGTACTTGAGATGATGAATGTGAGGGGACTTGGTATTTCTCATGTCAAGAGTCACTTGCAGGTAATTTAGATATCTCATATGTATATCATGAAATTGTGACTTTGCTTAATTTTTTATCCTGGACATAAATTGATATTCTGTTTTGTAAATCAGATGTACAGAAACAAGAAACTAGACGACTTAGGGCAAGTGAAGTCTCGCACCGTTTCCTCTTCAGGTTTTATTTCATGCCCTTGGAATGTCACCTCTTTTAATCTTCTTTCTGTATATAAAGATAACATTAATAAAATTGATCTGAATCTTATTATCAAAAGAGCCAGAAGTTAATTAATGATCCGTTGATATATACAGCTGTGTTCTTGATTTTTTATTTTTATTATCCAGTTATATTTTGTTGCAATTGTATTCTGATTTATGGCTATACAGTTTTAGTGTATACACTGAAACTATATATTAATGTTTATTGCCTGACCATAAATAGTGCATGACCATAAATACAGACTATACAGTATAACCAATATTGCCTGAATTTGTTTCACAATATAATCTCCTAAACAGTTATATCCTAAGTACCAAAATATAGACAACGAATATTTTATCTATGTATATAACCATATATACTCAATGTTACAGCCAACTCAGAAAATAGCTGATACTATTTGCTTAGCAGATATATAAATGGAAACGTTTCAACAATGAATTTAATTATATTCCAAAGTTATTTTTACATTTACAGCATTCTCTTCCCTGGATAATTATTTTAGAAGAGGAAATACAGTTTCAAAGACACTCACCCAGGAAAGGAATAGCCTGTACTATCTGCAGCACTCAAGAATGCAAAATTTACTTGGCAGATTAATGTACCCTCCTCAACTACCGCTTACCCAAAACAACAGTATAAGGTATTCAATACATATACACACCTTGTTATCTATACCGTAATTAAATGTTTGTGATTATATATTATATTATATGTACATGATTAGCACTTGTCCAGCATAAATCTAAATAGGGCTGTGTTTAGATCATCTTTTAAAATTTATAAGTTATATGTACCATAGACAGGTTTCCAGTTTTGTCTCAGAGAAAACAATTAAAGTAGAGAAAGTGATGTAAGAACCTGTAACTGATGAGTTTTATATATGTTTCATGGTTCAGTTATACAATCAAAATTAAAATTGGTATCTAACCTGTTGATCCCGGCATTTCCTTTTCTAATATTGCAATTAAACATTTGTACTTTTATACATACGTACAGGTTTCTATTATAGGTAGGAGCAGACTGCGATTAATTGATCACATGTAACACCACATGAATATAACTATTATTTCTTAATTAGAGAATCAAACTATTGGAGCCTATATGCTGTTAGTCTATTAGTAAAGAGGGAACTAAATCAAAGGTTTATATTTTGTTTTGGTACGCTAATCATTTTCAGGCTATCTCATGTGTTGGTTTGAGCTGCATGTACCATTGCTACTTTTTCTTTCTTTTTCTCTTTTAAAGAAGAAGAAGAGTTTATCTTGATAGTTGATACAATGATTGGCAAATATAGCACCACGAGTTTTATTTCATAAAATAATGTTTTTGGTGCAGGAAGACTACTATTTCATTTCATACACACATTTTTATGTTGCCTATGCTATATCCATAGACCCATTCGATCAGTTTATACTTAAATTGGCTCATAAACTTATTTAACCTATATACATCCTGAACATTTGGAATGTATATCTTAATATACTTCTATAATACTATCAGACAATTTGAAAGAAATATGGTTAGTCCCAGAATAACAGAGAGGGCTAGTTCAAGTCAAGAAGACATCAGTGACATGATAATCAAGAAAGTATTAAGAAAAACGACTAATTCTCATTTGTTCGATAGAAAAGAAAGAACAACTACATTTGGAAGTTGGAGTAATATTGGAACTAACGAGGTTGGCCAACACTATGAAATAGATGGAACAAAATATGGTTGGAAAGAAAGAAACAAATTCATATATTCTTGTGATGAAAGAAGCAACATGGAAACAACAACATACCCCATGTTTGATGATCAATCTTCCCCTGAGGTAATAATTAGTTAATCAATAATCATCTACTTGGTAGTATGCTATAGTCAAAGTAATATGATAATATTTATGATTTAATTTTTGATATGCAGAAACTTATGAAGAATCATGCTATGCATAGCAAACGCAAGTTCAATCACAATTCCAACACAGAAAAATCTACCACTTCAGAGGTAAAAAAGGCAAAGACATTGCAAGAGTACAATGATTATATACCAAATTTGCAGTTAAGCTTAAGGCCTATATCTATCAAAATTAATAAAGACAAGAAAGAAGAAGAATTAGATGATGACGATGGTCTTCTCTCACTTTCGCTCTCCCCTCCGAAATTACAACCGAAGCCCTTTCTAGAAACTTTAAGTTCAGCATCAAAGCCGATAAGAAGCTGAGTACTTTAGATCTGACCATGCTGATCTTTTGTTAATTTGCAGCATTGGAGTGAGATCTTTCAAGTACTTGGTTGTGTTAAGGCATTATTTTCAGCATATTTACTATGTGTTTTAGTTCCTTGATTAATTTAGACTGAATTATGTATTTCAATTAGTGAGGCCCGACCATGCTCAGTAATTTATGTCTCCATGTCATGAAATAGATCACTTGTTTGGTTATTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267656.1	1.0e-42	two-component response regulator ARR2-like
Swissprot	Q700D9.2	1.5e-19	Putative Myb family transcription factor At1g14600
trEMBL	A0A5P1EV40	7.2e-43	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38300.1	67.86	1e-28	124		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00844	AT2G38300.1	84	27	0	52	135	34	117	67.86	1e-28	124
AfisC1G00844	AT2G42660.1	67	15	0	64	130	42	108	77.61	2e-26	117
AfisC1G00844	AT2G40260.1	91	29	1	48	131	51	141	60.44	9e-26	114

Ortholog group

Species	Genes
Allium cepa	g104906.t1
Allium fistulosum	AfisC1G00844
Allium sativum	Asa7G01058.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	74	125	29.5	5.6e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network