result

Gene information

Detail information of AfisC1G01100

Location

Gene	Chr	Start	End	Strand
AfisC1G01100	chr1	189171741	189174226	+

Sequences

CDS

>AfisC1G01100
ATGAACTCTGGCATTCTAGCACTCTATATCACAATCTGTTGTATTGCATTCATTATTTCCAAAATCATTATTTCTGTGCTCCTATACAAACGATGGTCAAGAAAAAGAAGAATCGTGGAGGAAAGCATGTCAGGAGGGAAAATGGTGATGTTTCGTGCACCGACAACACAATCCTTAAGCTCGAAAGATTTCATGAAGAAGATAATGAAATTGACGAACAAAGATATAATAGGATCAGGTGGATATGGCACGGTATATAAATTGGTAATAGATGAAAAAATCACATTTGCAGTCAAGAGACTAAACAAGGGGCATGATGAAAGAGATCAAGGCTTCGAAAGAGAACTAAACACGCTGGGTGATATAAAGCACAGAAACATCGTTACTCTTCATGGCTACTACATTGCACCTCAGTTCAATCTTCTTATCTACGAGTTGATGCCAAATGGAGGACTAGACGCATTTTTACACAGAAGATGCAAAGGAGGGAAGTCTCTAGACTGGGCAACAAGATATAAAATTGCACTAGGTGCAGCAAGGGGTATTGCATACTTGCATTATGACTGTGTACCACATATAATTCATAGAGATATAAAATCAAGCAACATACTTTTGGATCAAAATATGGAAGCTAGAGTATCTGATTTTGGACTGGCTACATTGATGGAACCAGATCAGACTCATGTTTCGACGGTCGTTGCTGGAACATTTGGTTACCTTGCTCCTGAGTATTTTGATACTGGGAAGGCCACGACTAAAGGAGATGTTTATAGCTTTGGAATCGTTTTGCTTGAACTTTTAACAGGGAAAAGACCAACCGATGAATCCTTTATAGAAGAAGGAACAAAATTGGTTACATGGGTAAAAGCAGTGGTGGAAGATAAAAGAGAAGAACATGCAATTGATCCCAATCTCTTACATTTTCAAATCGAAGAGGTAAAAGATGTATTTGCAGTTGCGGAAAAATGCTTAGAACCGGACTGTTTGAAAAGACCGACAATGGCAGAGGTTGTAAAGATGCTGGAGGAAATTAAGTCTAATAAACTGTAG

Protein

Gene

>AfisC1G01100
CCCACATCTATCATTCTAATTTTCAGCATAATGACATTTTATTTTGTTCCTTTCTACTCTCTGATCTGCTATCATTTTCATGTTTATCTGAATTAATACTTCAATTTCTCAGTTGATTTGCTTCAAAAAACATCTGATTCTTCATCTGTAAGTTGTATAACTCTACGAAAATAATGCTGCTCAAGTCACCTTTATTACATTTTTGATGCTTTCAGTGCAACAAGGAACCTAGTCTATTTGATATCCTTAGAATCAACTATCTTCTTTCGAATTTATTTTTAGCTTTGTATTTTCAGACGAAAATGTCTAAGCTTTTTTTATTCGAACAATTTAGTGTATGCGCATTTGACTTCAATTGTATATCCTAGTTCGTATTCTATATGCTGGAGAAAATCTTGAAAATTGAAATAGTTTCAAAATGTTTATTGAAAATGTTGAAATGTAGTTCTAGCGTTTTATCTTGGTAATATGTGGCATCGATTATAAACTCATTTTGCATCAAATAGTATAGAAATTAAGGTTCTAATCTTGAAGTGACCATGTAATATAATTGCAGGATATCATTAGAATAAAGGGAGTATGAACTCTGGCATTCTAGCACTCTATATCACAATCTGTTGTATTGCATTCATTATTTCCAAAATCATTATTTCTGTGCTCCTATACAAACGATGGTCAAGAAAAAGAAGAATCGTGGAGGAAAGCATGTCAGGTATATTTCTACCAGATAAAACTGCATCTATGTTTTTTTTGACCAACAAATATATCCACAATTCATAGCAAAATCCTTTAAAGTCCTTTGTGCTCTAAATAGTATAAGCAGTTCATCATCATTTTTATGGAGACCAGCATCACATGGAAAGATTTATTGTCGTTGTTGGAACTTGAATTGAAACTTTCATTGTCATCTTATTGTTTTCATTAGATTAGCTACAGTTCTTATGGTTGGAAAGATGTAGTTTCCATGTAAAATTCAAAATTAAATATTGATTCTCATTTTATGGAACCTTAACACATTGATTCTCATTTTGATAGGAGGGAAAATGGTGATGTTTCGTGCACCGACAACACAATCCTTAAGCTCGAAAGATTTCATGAAGAAGATAATGAAATTGACGAACAAAGATATAATAGGATCAGGTGGATATGGCACGGTATATAAATTGGTAATAGATGAAAAAATCACATTTGCAGTCAAGAGACTAAACAAGGGGCATGATGAAAGAGATCAAGGCTTCGAAAGAGAACTAAACACGCTGGGTGATATAAAGCACAGAAACATCGTTACTCTTCATGGCTACTACATTGCACCTCAGTTCAATCTTCTTATCTACGAGTTGATGCCAAATGGAGGACTAGACGCATTTTTACACAGTAATAACCTTTACTTATGTACATACATTGGAAAGTGAATCTATGTCTATAACACAGAGATTTTTATGAGCTATTTGCACAGAAATGACCAATATGCTCCTCTTAGTGGGCAAAAAACAGTATTAATCCAAGAAGTCATTTTTGCTCCTCTGTGCAATAACATTGAAATATCTAGCTGTGTGCTATTTATGCAGAAATGTTATCTTTATTCATTGCACTAATAAGTGTTTGGGTATAGGAAGATGCAAAGGAGGGAAGTCTCTAGACTGGGCAACAAGATATAAAATTGCACTAGGTGCAGCAAGGGGTATTGCATACTTGCATTATGACTGTGTACCACATATAATTCATAGAGATATAAAATCAAGCAACATACTTTTGGATCAAAATATGGAAGCTAGAGTATCTGATTTTGGACTGGCTACATTGATGGAACCAGATCAGACTCATGTTTCGACGGTCGTTGCTGGAACATTTGGTTACCTTGCTCCTGGTAAGTTATATAACAGCGATGAGATGAACTAGTGGAAATATATGTGTATTTGAGGTCAGGTGATTATAATTGACAACGATGCTTAAATTACAGAGTATTTTGATACTGGGAAGGCCACGACTAAAGGAGATGTTTATAGCTTTGGAATCGTTTTGCTTGAACTTTTAACAGGGAAAAGACCAACCGATGAATCCTTTATAGAAGAAGGAACAAAATTGGTTACATGGGTAAATACCATAAGACTTTTATATAACAGGTTTAGTAGCAAGAATTTCTTTATGTTGGTGTAAATTTCTGTTGTTATTCTGGTATAACATATAACAGGTAAAAGCAGTGGTGGAAGATAAAAGAGAAGAACATGCAATTGATCCCAATCTCTTACATTTTCAAATCGAAGAGGTAAAAGATGTATTTGCAGTTGCGGAAAAATGCTTAGAACCGGACTGTTTGAAAAGACCGACAATGGCAGAGGTTGTAAAGATGCTGGAGGAAATTAAGTCTAATAAACTGTAGAAGACAAAATTGCTTAGCTTTGTAGCCGTATTCATAGATGTTTAATAGTCATTAGTAACCGTTTGTAGTTCAGTGCCAAGGGACAAGGATTAATTTACAGTTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269031.1	6.2e-166	receptor-like serine/threonine-protein kinase At1g78530
Swissprot	Q9SYM9.1	3.0e-133	Receptor-like serine/threonine-protein kinase At1g78530
trEMBL	A0A5P1EQ45	4.5e-166	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78530.1	68.57	1e-140	496		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01100	AT1G78530.1	350	100	3	2	345	3	348	68.57	1e-140	496
AfisC1G01100	AT1G31420.2	345	171	4	2	342	235	574	47.83	2e-90	329
AfisC1G01100	AT1G31420.1	345	173	4	2	342	235	575	47.54	2e-89	325

Ortholog group

Species	Genes
Allium cepa	g297579.t1
Allium fistulosum	AfisC1G01100
Allium sativum	Asa7G01170.1
Arabidopsis thaliana	AT1G78530.1
Oryza sativa	LOC_Os01g14510.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	73	339	169.7	6.9e-50

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0001578	P	microtubule bundle formation
GO:0001653	F	peptide receptor activity
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0004903	F	growth hormone receptor activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005496	F	steroid binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0005983	P	starch catabolic process
GO:0006468	P	protein phosphorylation
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009554	P	megasporogenesis
GO:0009556	P	microsporogenesis
GO:0009611	P	response to wounding
GO:0009647	P	skotomorphogenesis
GO:0009664	P	plant-type cell wall organization
GO:0009729	P	detection of brassinosteroid stimulus
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009826	P	unidimensional cell growth
GO:0009911	P	positive regulation of flower development
GO:0009934	P	regulation of meristem structural organization
GO:0010075	P	regulation of meristem growth
GO:0010103	P	stomatal complex morphogenesis
GO:0010224	P	response to UV-B
GO:0010234	P	anther wall tapetum cell fate specification
GO:0010268	P	brassinosteroid homeostasis
GO:0010480	P	microsporocyte differentiation
GO:0010584	P	pollen exine formation
GO:0016161	F	beta-amylase activity
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0033612	F	receptor serine/threonine kinase binding
GO:0042803	F	protein homodimerization activity
GO:0043234	C	protein complex
GO:0043621	F	protein self-association
GO:0046982	F	protein heterodimerization activity
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048366	P	leaf development
GO:0048481	P	plant ovule development
GO:0060548	P	negative regulation of cell death
GO:1900140	P	regulation of seedling development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network