result

Gene information

Detail information of AfisC1G01132

Location

Gene	Chr	Start	End	Strand
AfisC1G01132	chr1	193290320	193291598	+

Sequences

CDS

Protein

Gene

>AfisC1G01132
ATTCAACATATCAGCCCATCCTCACATCCAAAAATATACATTTCCCCGTTTAGATCTCAAATCAAATAAACAACATTTTACATAAATAAATGGATACAAACGCCCTTTCTGAGTACTCCCCCAACCCTCCAAAGCTGCAGCGCTTTGGGAGCGACAGCAGCGCCGTATCAAACGACATCTCAGACTCCAGAAAACTTCCTTCGTCCAAATACAAAGGGGTAGTCCCACAACCCAACGGCCGTTGGGGTTCCCAGATCTACGAGAAGCACCATCGGGTGTGGCTCGGCACCTTCGAGTCCGAATCCAAAGCCGCTCTCTCCTACGATATCGCTGTCTACAAGTTTCGAGGCCGTGATGCCATCACCAACTTCACCTTAATCAAAGATGAGTCCGAGCTCGACTTCATTGCATCACGCTCCAAGGCTGAAATTGTAGACATGCTCAGGAAGCACACCTATAGAGACGAGCTCAACCAAAGCAAAAGGGTTGCACTCTCCTGTACAGGCCAATCGAAGAGGAAGAGGAACGGCGATGATGGCGATAAAGAGCAGATGTTTGAGAAGATAGTAACACCGAGCGATGTAGGGAAGCTGAACAGGCTGGTGATACCAAAGCTCTATGCCGAGAAGCATTTTCCAATGGTGAATGGTGCAAGTATGCTGCTGAGCTTTGAAGATGAAGGAGGAAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGTCAGAGCTATGTGTTGACCAAAGGGTGGAGCAAGTTTGTGAAGGAGAAGCGGCTGAAAGCAGGTTGGGTTGTGGTGTTTGGCAGATTATTGGGTGTGGAGAAACAGTTTTATATAGAATGTCGATGTGGTGCTGCTGATGATCGGAATCAAAGTCATACTGAAGTTGAACCTGCAGCTGTTGCGGTTAGGAGTGATGTTTTCAGGCTGTTCGGGGTGAATTATTTGTTAGATGTTTCCAGGAAGGAGATTGTCCATCACTTATTTCCATTTGATCAATTTGATAAGAAACAATGTGTGCGAGCTTTATAACATTTGCTTTAATTTATGCAAGTTCCATGTATATCCCTCTAGTTGATGTTAGATGTTCCAAAGGGGGAGATTGATCTGATTGATTCCACTAGAATTTGTAAAGAGGCAGTGCGTACGTACAAGCTTTTTATAGCATTTCCTTCGTAATGTAGTTTATACAGTGAGGGTTTGTCAACAAAAACTCTAGAGAGTGAAATACAATTACATCTGCTCCTCTCCATCGTATACAAAGTATCAAGTTTCCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010916479.1	1.9e-81	AP2/ERF and B3 domain-containing transcription repressor RAV2
Swissprot	Q9ZWM9.1	4.5e-80	Protein RELATED TO ABI3/VP1 1
trEMBL	A0A8K0I2R4	1.6e-82	AP2/ERF and B3 domain-containing transcription repressor RAV2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G13260.1	55.34	6e-83	304	EDF4;RAV1	related to ABI3/VP1 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01132	AT1G13260.1	309	88	8	16	296	33	319	55.34	6e-83	304
AfisC1G01132	AT1G68840.2	297	100	6	10	285	26	310	55.22	4e-82	301
AfisC1G01132	AT1G68840.1	297	100	6	10	285	26	310	55.22	4e-82	301

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	39	87	21.9	0.00015
PF02362.18	B3	Family	156	243	97.8	2.4e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048366	P	leaf development
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network