result

Gene information

Detail information of AfisC1G01133

Location

Gene	Chr	Start	End	Strand
AfisC1G01133	chr1	193378585	193379585	-

Sequences

CDS

Protein

Gene

>AfisC1G01133
CTCAAATCAAATAAACAACATTTGATAGTTTTATAGCCAAAAAGACATAAATATCTTTATTACAACGTTATACATATATGGATATGAACATTTTGTACCCGAAGCTGCAGCGCCTTGGAAGCGACCGCAGCGTCATATCAAATAACGACCTCTCAGATACCAGAAAACTTCCTTCATCCAAATACAAAGGCGTAGTCCCACAGCCCAACGGGCGTTGGGGATCCCAGATGTACGAGAAGCACCACCGGGTGTGGCTCGGCACCTTCGAATCCGAATCCGAAGCCGCTCTCTCCTATGACATCGCTGTCTGCAAGTTCCGTGGCCGTGACGCCATCACCAACTTCCCCTTAATCAAAGACGAGTCGGAGCTCGACTTCATATCATCATGCTCCAAGGCTGAGATTGTAGATATGCTTAGGAAGCACAGTTACAGAGACGAGCTCAACCAAAGCAAAAGGGTTGCACACTCCTGTGCAGGCCAATTGAAGAGGAAGAGGAAAGACAGTGATGCTGGTAAAGAGCAGATGTTTGAGAAGTTGGTCACACCGAGTGATGTAGGGAAGCTGAACAGGCTGGTGATACCCAAGCTCTATGCTGAGAAGCATTTTCCAATGGTGAATGGTGCAAGTAAGCTACTGAGTTTTGAAGACGAAGGAGGGAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTATGTGTTGACTAAAGGGTGGAGCAGGTTTGTGAAGGAGAAGGGCCTCAAAGCTGGTGGGGTTGTGGTCTTTGGGAGATTACTGGGTATGGAGAAGCGGTTTTATGTCGAATGCAGATGCAGTGATGATCAGAGTAAAACTAATGGAGTCGTCGAATCTGCAGAAGTTGCTGTTAGGAGTGATGTTTTTAGGCTATTTGGGGTGAATTATTTGTTGCATGTTTCAAAGAATGAGATAGTCGATCAATTGTTCCCACTAGATCAATTTGTGAAGAAACAATGTCTGCAAGCTTTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	KAB1994116.1	5.4e-81	hypothetical protein ES319_D13G077500v1
Swissprot	Q9ZWM9.1	1.7e-79	Protein RELATED TO ABI3/VP1 1
trEMBL	A0A5D2HVL6	3.9e-81	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G13260.1	55.18	4e-82	301	EDF4;RAV1	related to ABI3/VP1 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01133	AT1G13260.1	299	103	7	10	289	33	319	55.18	4e-82	301
AfisC1G01133	AT1G68840.2	329	126	6	9	307	34	352	49.54	4e-80	295
AfisC1G01133	AT1G68840.1	329	126	6	9	307	34	352	49.54	4e-80	295

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	34	82	22.8	7.3e-05
PF02362.18	B3	Family	151	246	96.6	5.9e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network