result

Gene information

Detail information of AfisC1G01145

Location

Gene	Chr	Start	End	Strand
AfisC1G01145	chr1	195506210	195509557	+

Sequences

CDS

Protein

Gene

>AfisC1G01145
ATGCTAGACAATTTAATTGGAAAGGGAGGAAATTCATATGTATACAAGGGTTGTCTTCCTGGCGGTGAACTTGTAGCAGTGAAAAAGCTAACAATGAAAGAAACTGGAAATAAAAGGACTGGAGCTTTTCTATCAGAGCTTGGTATAATGACTCATATTAACCATCCAAATGTTGCACGATTACTTGGGTATAGTATTAAAAGAGGATTGCATTTTGTTCTACAATATTCATCTCGTGGAAGTCTTGCTTCTGTTCTCCATGGTATATCAATGTCTTTTTAAACTTTTTTTTCCTTTAGCATATAGTATTGAAATAGTATTAAAGTTTCTTGCAGGCGTAATTCTAGTAATGAAAGAAAGTTTTTGGTTACGCAGGTTCAAAGGATGCTCTAAATTGGAAAATGAGGTTCAAAATAGCTTTAGGCATTGCGGAAGGGCTGTCATATCTTCATGAAGGCTGTGAAAGACCTATTATTCATGGAGATATCAAGGCATCCAACATTCTTCTCACATTTGATTACCAACCTCAGGTATAAATTAACTACAACATTGGAATACTACCAGTTGCAAAATCTGAAATTAAATATATTCTTTGGTTTTGAGGGCACTGAATATCAATGAAAGAATTTTAAGCCACTGCATCTTAACAATTTTCGACGTTCATGTTAATTAACACAGATCTCCGATTTTGGGATTGCAAAACGACTTCCTGAAAACTGTGATCACCAAACCATTTCTCCTATTGCAGGCACTATTGGGTAGGAACATTTACAAATTTTGAAATGATTACTTCTGAGTAAAGGCAGTGTATAGTTTAATATGCTTGAGTTAACCATGTTTTAAATTGATTAATACAGACATTTGGCTCCAGAAGCTTTTATGCATGGATTGGTTAGTGAGAAAACCGATGTATTTGCATATGGAGTTTTGCTGCTTGAGTTAATTACAGGACGTCATGCTGTTGACTCTTCTCAAAAGTACCTTGTCAATTCGGTACAATATTATTACTATCAACATTTATCCTTGGTGTTTATAAAAACTTTGAGCTTACACTTAGAGCCTGGTAAAATAATGCATATGTAATCTATCATAGATGATATTTAGCATGTTGAAGATGAGCCACAATTTAAGATAAGCAAAATTTAGGTAGACTAGAAGTTGTTTATACATACACATGCTGACATAAACATATATCAATTAGGATCACATATATCAATAAAGATTTGTTACACCTCTCTTTCGCTACATCCCATTCTACACCCCTTCGTATTTTAGAGCTACACAATTTGAAGTGATATGAAACTCCGAGAATGTTCTATCTACACTATGCACATCATATCCCAAAAAAGGTCATTTTGAAACAAAGGTCATTTTGAAACAAAGGTCATTTTAATATGATAATTGAATGTCTTGTGAAAATATAGTTTTATTGTTTCATGTTAGATGCAAATTGTTAGTGATTAATAACTTTAATGTAATGATAGTAAGATAACTTTCGTAAATTGTCTTATGGATAGTAAGATAACTTTATGTATGCTAGAAACATGTATGCAAAAAATATTCTCAAATCTGAATAACTATTGTTAAAAGCTTTTATACGTAAAGAGAAGCACAACTTTGATGGTATTTGTACATAAAGTTTGTTCCTTCTAAAATTTGAATTACTTTGATAGTGAAGAGAGTTCAAATGACTATAAAGAGAAGCAGGCTTCGAGGAACATCGTCACAAAGAGAATTATACATGCAAGTTGGAGCGGAATACATAAGACAAGTAACTACAGTCGTAAAAAGTCACATTAATTCCTTAAAATCACCTTCAGGTCCATCTTCTCTTAAAGGTGAAATTTAGTAGCTCTTATTTTGTAATATCTTCAATACATTTGTTTTTGCTGTCTTCTTTACACATGTTTATTGCTATAGATGATGCTATGTCTTGCTTGCTACAATTGCAAAGTTCCAGTGAAGTTAAAGATTCAGAATCACCTATCTGCTTAAAACCGGGAAGCGGGTATTCTCATGTATTGTAAGTTTAAAACAGAGTATATAACTGCACACAGTTGTCGTAATTTAACTGAAATTGTGAATTCAAATTCAAAACTTGTTGTAACAGTTTTCCAGAGAATCAAGCAGATGCACTTGTTGTAGAAATTTTAGACAGTAAGAATTGCAGCAAAGGACAAGTGACAATTCAAATATCTTCATTGCAATATGGCCATGTATGCATGTTTTAATTTATAATTTCATTATTTTTTTAATTTATTTTTGTGAAGTTCTTTAGCATTTAAGTCGTATAAATATTAAGGGGGAAGCAAATGCTTCTGAAGTGGTCGCTTGTGTTTATTTATATCAACTTTTATGAAATATCTGCAGAGAAGCATGCTATTGGAATGTGAAGAGCACATAGAAGCCTTATTAGCAACAACATGGCGCTTGTGGAAGCAAATGCTTCTGATTCGGTGCTGCATATGACATGAGGTATGGTGAAGTGAATTGTGAGTTCTGATTGAGCAAGGCTAGTTCGTGATTGGGAATTTTTGCTGATTTTGGGTGATTCGGGTTTGGGTGAAGAAATGATTGTGGGCAGGGAGGATGATGTCGGAGTTCGGTTGCAGTTTCAGGAGGTGGTCATGGCAAAGGTTTCGTGTTCAAATTTTAGGCAGCTGCGGTGAAAAGTCGTGGTTCGATTGTTGGGGTTTGTTGTCGTGATGTAGTTTATAGGGTTGCGGAGGTCTGATGTTTAAGGAATGGCGAGGCAATGGGGGATTTTTGTGGTTATAGGCAGAAGACTGTGGAGTGGTCGATGGTGGTAGCTCGGTGGTAAATGACAGTTTTGTGGCAATCTTTGCTGAGGATTTTGGTTATGCAGTTTATGCTGTTGTGGAGGAGTATGGTTGTAGATGATGTTGGTAGGATATTTATGGTGGTGATTGGTATAAATGCAATGATATGGTTTGGGTCATATGTGATTGCAGATATGTGAAAGTGTATTTGGTAAAGTTTGTGTCAATGAAGTTGTGGGGAAGTAGAGAAGTTGTTGAAGTGTATGTTGTGATTCAGGGAAGTGGATGGGGGGAAGTTGAATAGTGGGTGGAAGAATTTGTAGCTGGTGGGTAATGATGAAGTATGGGGTGACGAGTACGTCTCTTTTGTGGTTAATGTGTTTAATGTGGGAAATTGAATGGTCGGGGTTGATAGGTCTGTAGTGGTGTTGTATGTGCAGGTGGTGATGGGAAGTTGTCGGAGACTGTGGTGAAGCTGATTGTGGTCGGGGCAATGCAGTTCTGTACAGGGGATGTGGAGATGTATGTGGGAATTAAACAGGGAGGAAGAAGTTGCTATGTGCAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026664948.1	6.3e-79	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2
Swissprot	Q8H1D6.1	8.0e-71	Protein ROP BINDING PROTEIN KINASES 1
trEMBL	A0A8T3B963	2.7e-79	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65530.1	65.53	3e-75	279		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01145	AT5G65530.1	206	68	2	3	206	147	351	65.53	3e-75	279
AfisC1G01145	AT5G10520.1	205	75	1	3	206	156	360	62.93	1e-72	270
AfisC1G01145	AT5G35960.1	208	81	1	2	209	136	342	60.58	5e-71	265

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	3	203	131.8	2.4e-38

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005634	C	nucleus
GO:0005983	P	starch catabolic process
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009414	P	response to water deprivation
GO:0009570	C	chloroplast stroma
GO:0009623	P	response to parasitic fungus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009814	P	defense response, incompatible interaction
GO:0009845	P	seed germination
GO:0009934	P	regulation of meristem structural organization
GO:0010075	P	regulation of meristem growth
GO:0010150	P	leaf senescence
GO:0010480	P	microsporocyte differentiation
GO:0012505	C	endomembrane system
GO:0016161	F	beta-amylase activity
GO:0019901	F	protein kinase binding
GO:0033612	F	receptor serine/threonine kinase binding
GO:0043621	F	protein self-association
GO:0046777	P	protein autophosphorylation
GO:0048229	P	gametophyte development
GO:0048364	P	root development
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network