result

Gene information

Detail information of AfisC1G01208

Location

Gene	Chr	Start	End	Strand
AfisC1G01208	chr1	208411050	208414767	-

Sequences

CDS

Protein

Gene

>AfisC1G01208
ATGTATGATGCTTTTTCAATATTTGTTGACAGCGGAGTAGAGCTGGGTGAGGTTGCGGTCTTGTTGGGATAGCCAACAGTTGAAGAAGTTGGAGAATATCAAGTGGTCCGCCGTTTGTAGGAGGTCCTATCTCATATGGAGAGAGTGAAGCATCAGGTGGTGTTCACAACTTGAATGGAAACGAGCAGTTTAATGATGGAAGTTCTCCGGATACATCACCTAAATCACCCGTTGAGGATCGAACCACCAACACATCTGTTCCTCAGGTAATACTTATTTGTATCTACAATTGACTGACAGTTTTCTACGGAAAATAAACATAAAACAAGATAAATTATGTTTTTGGTTTTATTTAGAGCAAAATTTCTAGCATAAGACATATACAATAACTAAATATAAACTCTCTGAATCCACGATTTGTGAATCAGATCTGATTTCGATCTAGAGTTTAAACTTTATGATTTATAATTTGAATTCTATTTTAAAAAATTACGGTCTATAATTTGAAATTTTGAATTCCATTTTAGTAACCTTGGACCACACCTTCAAACCAAAAAAAAACAATCAAATTTCTGATAATTGTACCAAACTTAGTTGGACAGAAGCTGGGGATATAAAAAAATTTGTAACCTTGTTTTTTCATATGGACTGAAGTACTTGATCTCATTTCAGGTGTTAGGTGAAGCTTACCAGGTTCTAAGTGATCCAACGCAGCATCAAGCTTACGATTCTTATGGAAAATCAGGCATCTCAACGTAAGCCTTTTTTTATTGTTGGAACATAACTTTCTGGTATACTACCACCCAAGATTCCATCCATATAATGCATGTTTTAATTTGTGATCCATCCAATATAAAAGAATAGAGATAAAGAAAATAGAAAACCCAACTAATAGGCAAGTCACTTATTCAAAAAGGAGGCTTGGAGTTATGAAAAAGGCCAAAGAACTCACTGTTCTATGTGATGCTCAAGTATCTGCCATCATGTTTTCCAGCACTGGCAAGTTTGCAGAATACTGCAGCCCTTCTACCAGGTTATTAACACATATTATTCTCTTGGTACTATATAGGTTTGTTTTTGTTATATATGAAATGGTCAATGTGGTTGATTATATGATGTGATACAGCACCAAGAAGATTGTGGATAGATATCAAAAGGAAACCAGCATTGATTTGTGGAATGATTTGTATGAGGTAACTGAAAATGTACATATTTTCTTTATCAATAGTCTATAAATTTTTGTGTGCATGTAAAATTATGTCTGGTTTGATGTAGAGGATGCAAAGTACATTAAGGAGCCTTGAGGAAGATAACCAGAAACTCCGAAAAGAGATAAGGTGACTATAATTCAAGATGCATGTGAAATTATATCAGTTTTATCACTGATTTTATTACAAACAATTTTGTTACATGTAGGCAGAGAATAGGAGAAGATCTTGATGGAATGAGCATCAATGAATTGTGGGGGCTTGAGCAAAGTTTGGATGACACACCGATGCATGTTCGTCAAAGGAAAGTAAGTTTTACCTGTCAATTTGTGCAGTTGAGAACTTAAGTCTTATTAAGGTAGCTTATGCAGATAGAACCACATCTCTCCGGTCCAATTTTTCTATCTTCTACAAAAGAAATAGAAGCTTGTTAAATTTCTTCTATCGTGAACTTGTGATATCAAATAACATGACTTGTGTTATTTCTCTTTTCTTCGGCCTCTCTAAGTGTCTGCATCTCTCTGCAAGTCTTTGTTGAACCACAATTACTTTTTTACAGCCTCACATTATTGCAGCCTCACAATTTACATAATTTTGCACTGCTTAAGCGATAACAGAATTTTCTATTTATCAGTTGATGTAAATTATCATCATTTGATCTTTGCATATGTTTATATGATTATCATAGGTGATTTTAGTGCTTGATTTTGCATCCACTATTTGTATGTGTGGTAGTTAAATATGTGTTGCTTATACCATTTTGCATGAAATAGTGATTGTCAAACATTTCTTGAATGATTTAACAAATGTTTGCAATTTTTATTATTGATTCTAGTTTCCGTATTCGACACACAAACTCTACAGGTATATTCACTTATACCATTTTACACAAAGTATTAAAATGCAATCTTTGTTTCACCCTTAATTGTTTGGAGAATCCAGAAAATCAAGCCTAGTTAAAGTAATTCGAAATATGTAGCCGATGATAGTAAAGATTAATCTTTTGAAAATCAAAATATACAGTGTGGCAATCTCTAATCTCATGATGCTAGAATTTCCAAGAGGCAATACATTGATACCCGTATAAAATATGGCCTAAAGGCATGAACGTGTGACCAATTTACTAAGGATAGAGGCAACGCAAGTAGCAAACAGCCAAACACCTTTTGGAGAAATTGATGTACAAAATACATTGAGATGGTTTAACAAATATTTAACAACCTGACACTTTGTTTTTCTAAATTGTAGTTAATACTTCAATATGGTTTTAAATGACTCATATGCACGCAAGAGGTGGCCTAGAAATTGAATTATATGCAAGCAACGAATAGCTGGACACACATGCCTAAAAATTTGGATAGTCTTTACTTGCAACTTATATACTCAACTAACTAAGAAAAGATCACTGACCCGGGCTAACCCTTTTTCTTACGTATTGCCTCATGCAAATGAATTACATAATAACTGTATTACACTTTGGTTTTCAATTATATCCCCTGAACACGTGAGAATGGATTTAACACAATCTTGGGCAAACTATATACATGCATGCCAATGATTATGCAGTCATGCAAATATTTCACACACCTGTACACTACTATATACTATGCTAGCACACAATTTAAAACATATATGCATGGACTTTGTATGCAAAATGACACGCAATATTATAAGTAGGGTCTGGGCTTTAATTTTTTTTCTTTCATGTAATACAACTACACCTAAATACAAAAGTGTTCATGTTTGGTCTAGTCCAGTATTCAGTTTAAACTTTAAAGTGCCTTTAAATTATTTCTAACAGAAGAAAATGGTAAAGTACTAATCTTCATTCTACCTGTCAATTTGTGCAGTTGAGAAGCATCCACGAAGCACATAAGGCCTTGCTTCATGCATTGGTCAGTAAATACAAAGTTCCGTCTGTATAAAATTTTATCGAAATTACAGTGCATTATTTTGAAGTATCTGTAATACTGACATGTTTTTCTATATTTGGTACAGGACATGGAAGAAGATCAACTTGAATACACTTTCATGACTGAAGATGCAAATGACAATATAGAAGCTAATGGTATGCGTATGTTTACATTTCCAGTACATTCAAACCACCAAAATGTTCATTTTTGGAAAACTTTCCAAAAATACGAGTCAACCTGGATTTTCGGTTTAATGATAATAGATACCTAATTTGCATATTACTTGCCAAAAAGGATTTTCGGTTTTATTTAGAGGAATCAGCTTATCCCTCTTAATTTTCCTGTTGGTGCTCCCTTGTTCATCATTAGATAAATTATCCTTAATTAAACTATTTCATCTAAATTATGCAGGTCTTTCATGTCAATGTCCTTTCTGTATATGGGATAATACCATAATTTGATTTTGTTACAGCTTATGGAGTCGATATGTTGAATACAATTGGCTACATTTATGTAAGACAGTCAGCTAAAGTGTGCAGAAGGGAAATGCACAGTTGTATGAGGGAGAAGTTAGTTAAATATGGAGGAAGTGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD95987.1	2.3e-52	MADS-box transcription factor AP3
Swissprot	Q003J2.1	2.9e-36	VviAP3b
trEMBL	Q53US5	1.7e-52	MADS-box transcription factor AP3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54340.1	47.85	3e-34	142	AP3;ATAP3	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01208	AT3G54340.1	163	78	1	93	248	18	180	47.85	3e-34	142
AfisC1G01208	AT5G20240.1	172	103	2	94	265	19	180	34.30	8e-23	104
AfisC1G01208	AT4G37940.1	214	117	7	91	293	16	212	32.24	1e-20	97.4

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	92	132	58.3	3.5e-16
PF01486.14	K-box	Family	159	232	45.6	5.2e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010093	P	specification of floral organ identity
GO:0044763	P	single-organism cellular process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network