result

Gene information

Detail information of AfisC1G01356

Location

Gene	Chr	Start	End	Strand
AfisC1G01356	chr1	231902935	231904251	+

Sequences

CDS

Protein

Gene

>AfisC1G01356
GTTCAATTTAAATTTCTGCCCTCCTTCCTCTTTTCCGGTCACTAACCTCATTTTCCGAGAAAACAATGAACTCCTAAATTTAATTACAGCCGAATCCGACGGCTTTGATGAACCCACGTGCTCCGTTACTTTCCGGCACCTTCCGCCGGTCTATAAAACAAAAATTAGGGTTCCAGCTCCCAAAATCCTAAAAAACTCCAAAAATAAAATATAACAAATGTCATCATCACGTCCGCTTCCATCCCGAGAAGATTACTGGAGCGAAGGCGAGACGTCGGTACTGATCGACGAGTGGGGCGATCGTTTTATGGAGTTCAACCGCGGCAGCCTTCGTCAGGGTCAATGGCAGGAAATCGCCGATGCCGTCAATTCTCGTCCTTGTGACGCGCGTCGTCCTCCGCGCACAGACTTGCAGTGCAGAAATCGCGTCGATACTTTGAAGAAGAAGTACAAGATCGAGAGGAATAAATGCAGGGCGAGTGACTGGATTTTCTTCAAAAGGATGGATTTCTTGCTCGGACCTATTTCTGCTAGGAAATTACCCCTGCCATTTTCTCTTCCCCTTCCTACTTCTGAGCCAGTTGTGGACGATACGGATCTGTACTATAGCAATGGTGTCGGTTGTGATGATTCAGATTCAAGTGGAGAGATTTTGTATAGGAAAAGGTGTAGAGTTAATGTTGCGATGAAGGAAAGTGAGGGGGTTGGGGTGGATGAGCTGGCAAAGACAATAGGGAAGATGGTGGAGGTGTACGAGAAGGTGGAGATGGAGAAGAGTAGGCAGATGATGGAGCTGGAGAAAGAAAGAATGGAGTTCGTGAAGTCAATTGAGATTCAGAGGATGAATATGGTTGTGGATATGTTGGTCAGTGCGAAGAAGATGAAGGGTCTGAAACGAAGAAATGCCGGTGAGCATTATAAATTTTAACTTTGCTCAAATGAAATGTTTGTAGTTGTAGAATGTGAACTTTGTTTGGCTAAGAAATACTTTTGTCTGATCTTCAGTTGGTGTTACTCCATTATATTTTTAAATTTATAATCAGACTTCATGATTCATGTTCTGATTCCGAATCCGATCCTTTGCGAGGGATGAAAGTATGTTATAATTATAAATATCGGTTTCATTTGTATGCTAGTTTCGGATGATCAGTTTAGAAAGATGTACCACTTTTGCATTATGTTATCGGTTAGATTGACTCGTAACTGTGCATGGCTCCTTGCTATGCAAATGGAGTTCCAAAGGACAGGTGGTGTGGTACCTTTCTTTAGGGTTTGAGTAAAGACGGGAACAAAAATTGAAAGAGGCAAAGAAAATAC

Functional annotation

Database	accession number	e-value	annotation
nr	PKU72660.1	1.2e-43	hypothetical protein MA16_Dca010230
Swissprot	Q9LJG8.1	2.1e-21	Trihelix DNA-binding protein ASIL2
trEMBL	A0A8J5HWQ3	6.5e-44	Myb_DNA-bind_4 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G05550.1	42.37	5e-39	157		sequence-specific DNA binding transcription factors

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01356	AT5G05550.1	236	121	4	3	230	13	241	42.37	5e-39	157
AfisC1G01356	AT5G05550.2	236	121	4	3	230	13	241	42.37	6e-39	157
AfisC1G01356	AT3G11100.1	240	124	7	2	230	9	244	42.08	2e-37	152

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	12	98	75.1	3.9e-21

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009733	P	response to auxin
GO:0009793	P	embryo development ending in seed dormancy
GO:0010029	P	regulation of seed germination
GO:0010431	P	seed maturation
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0048831	P	regulation of shoot system development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network