Detail information of AfisC1G01367
| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| AfisC1G01367 | chr1 | 232790661 | 232795181 | - |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | XP_026393222.1 | 9.5e-81 | zinc finger CCCH domain-containing protein 1-like |
| Swissprot | Q8GX84.2 | 1.2e-80 | Zinc finger CCCH domain-containing protein 1 |
| trEMBL | A0A4Y7I8W2 | 6.8e-81 | Zinc finger CCCH domain-containing protein 1 |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT1G01350.1 | 63.35 | 7e-114 | 407 | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein |
| Species | Genes |
|---|---|
| Allium cepa | g232422.t1 |
| Allium fistulosum | AfisC1G01367 |
| Allium sativum | Asa7G00017.1 |
| Arabidopsis thaliana | AT1G01350.1; AT5G06420.1; AT5G06420.2 |
| Oryza sativa | LOC_Os02g19804.1 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF00642.21 | zf-CCCH | Family | 176 | 201 | 37.6 | 1.3e-09 |
| PF13920.3 | zf-C3HC4_3 | Domain | 254 | 296 | 36.1 | 4e-09 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0005515 | F | protein binding |
| GO:0003676 | F | nucleic acid binding |
| GO:0016020 | C | membrane |
| GO:0005684 | C | U2-type spliceosomal complex |
| GO:0008270 | F | zinc ion binding |
| GO:0034247 | P | snoRNA splicing |
| GO:0045292 | P | mRNA cis splicing, via spliceosome |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K13127 | RNF113A, CWC24; RING finger protein 113A | EC:- | - | - |