result

Gene information

Detail information of AfisC1G01373

Location

Gene	Chr	Start	End	Strand
AfisC1G01373	chr1	233949589	233952669	-

Sequences

CDS

Protein

Gene

>AfisC1G01373
ATGAGTTTCTTACAGACTCCTAAGGATGAAAGTGAAAATGTATCGCATGTAGGTACGGAATGGATCATCGGTTGCCTGTACCTACTCGCTGCAGTTCTTGTTGTTTCTTACAGCACTGTTTTGCAGGTTCCTTCTTTTAATAAAATGCCACATATGCTAATTTTAAATGGATTGAAAATCGATATATAATGATACACGTATATACTTGTTGTATGAATCAGGCTGTTACGATGATCTCATTTCCTGCACCATTCTCGTTTTTTTGACAATTTCACAATTTAAACTAGATTTTGTGTCCATTACCTCATTTTTTGTCAAAAAAGTTTTTATACATTCTAATATTGTTCCTATCCCATTCTCCCTTCTCTTTCTTCTATACACACACATATATACACACATACATACATACAAACACACAGATACACGGATGCCTACCTTTTACATTTCTAATAAAACACATATATTCTAGATCTTGTGATGGCATTTGCAGGATCTGCCCTTGCTATGTTTATGGTTCGTCTTCCAATTTTTTTCGTTCCTTTACGTAGAATCAAAATTACAATTATACATTGGCAATTTTAAGTTGATAATTTATGTGTTTTGCAGACTTTGATCTTTCCATGTGCATGCTTCATGAGTATAGCCAGGGATAAGCTTACCTTTGGCCAGGTAGATATGTTTCTTGAGAATAGTAATTCTTTTTTGTTGCTTATGGTGGTACGTATAATTTATATTCATGTAGGAAGCGGAGAATCCAGAATGCAAGCCTACACGAGTAAAGGCGTGGAAAGTAGCGCACACAAGTAGAAAAACCGGAGAGGTTCTTCCCTGCGCAGCAGAAAAATATGTAAGTTTTTATCATAATATTGACGTAATTTATTTTAATTCAATGCTAAATGTTGTATTAAAGAAAGCTGGTTAGTTTGATAATTCAATCCTAAATTGTTTTTTTCTATTGTCGATGATCCTACTTGATAATTTTTGTTTACTTAGTTTTTATTAGTGATTTTACATGGTAGCCTTTTGATTTATAAGGAAAAGCATCCGATGCCAACGTACCTTTTCTCCCCATTCGCCACAATGGTCCATTTGGGGAAAATGGACCGTTGCGACGTCAGACGCGTTGGGAACGGTAACAGTGCCAAATAAGACGACGAACGTTACCTTAAAGTGCAAATGAATGTCTGGACTTTGTAGTTTCGAACAAAAATACCATTGGTTTAATTGAAAGGTAAATTTGTTCTCCCTTTAGTGTAGTGCAGCTGAGACAGTGAACGCATAGTGCATACTCCTTTCTAATGCGTTAAACTTGAAATTATCTATGATGTATTATAATACCCGAAGCCTCCATGGATTTTCAAATGAAGATCAAGATTACAATAAAAATTATGTGCTATAACAGAAATGAGACTGTTTGCCAAACAGCAAAAGTAACTTATTAAGTTAAATTTAGTATTGGGAGTGGTTGGGCTTTTTATTTTATTTTTTGTTGACGACGACTGACTTAGCAACCGATAAACTATATGCAAAAATTATAAACATGACTTGTTTCAAGTTTTACAACTAAATTTTGTCACAGTTCAACGTGTTTGTCCAAACACTTGGTTTTTTTTTGTTCATTCAAAACTACTCAAAATACCTCTTAGGGATATTTTAAACAATATTATACCAATCCCTGCCATATGTGGAAATATATAACTATTTTTTAACGTGCAGATAGTATCATTGGCTCTGGTGGATATGCAGAAGTATACGAGGGAAAACTCGAAAATGGGAAACTAATAGCCGTTAAGAAACTGATCAAAGGAACAGTGGATGAAAAAACACATTTATTCTTATCTGAACTAGGAATATTGGTTCACATAAACCCTGAACACATAGCAAAATTAGTTGGCGTTTCAGTAGATGGAGGCTTCAACCTCGTATTCAGCCTGTCGCCTCATGGAAGTTTATCAACTCTTCTTCATGGCCATGGAAGCTTATCATCTCTTCTTAGTGGCACGTACAGAGGTAAATTAGAATGGGAAATCAGGTACAAAATCGCTATAGGCACGGCACTGGGTCTTGAATATTTGCACGAAAGGTGTTAGCGCCGCATAATTCATCGAGATATCAAGTCTGCTAATATCCTCATTACTGAAAACTTTGAACCATAGGTTACTTTTGAAGTAACTACAGTAGTTTCCTGGACATATAATAAAATTAGATAAAACTATGTTTGAATTTTAATGCAGATTTGTGATTTTGGTTTGGCACTGTGGCTGCCTGATCAGTTAACCCATCACATAGTTTCAAGCTTTGAAGGCACTTTCGGGTATTTATCCTCGGAAAGATTCAGTTGAAGCTACATTCATATACATATTTTCCTGTTACATTTGTGCATGTGTACAGATATCTTCCTCCAAAGTATCTCACGCATGGTGTAGTCAATGAGAAAACAGATTGCATTAGGCGTTTTGCTATTAGAGCTTGTGAGTGGGCGTAAAGCTTAGATTCTTCGAAACGGGGCCTATTAATGTGGGTATGTGAGTGTGTATATGATTATGCAGAGTTAGAATTTTGTGCAATGTATGTATATAAAATCATCTTTAACGGTGAAGTTAAATATCACAAACTAAACTGTGGCACTTAGGCAACTTTGACTAGCCGTGGATGTGTTAAATTTAACTAGATATTTCTTTAGGCAACGCCACTGATTGAAAAGAATGTAATAGAACTTGTCATCCCTTCTATGAATCACGTTTACGACAGTGAACAACTGAAAAGAGTGATAGAAGTTGCTTCATTGTGCACTCAGCATTCAGCTGTGCTGCGGCCTAGGATAAGCGAGGTATGTTTTTCTTTTGAATGTTGCTTGTATTTTAACTGAATTGGTTTGTGATTCTTGACTATGTTGAATATTTGCAGGTTTTAACCCTGTTAAGAGGGGAAGAAGCGAAATCGGATGATAGAGTGATGCACAAAAAGAAGGTGAAAAGGAGGACATATTCGGCAGAATTACATGATGCTGAAGATTATTATGTAACTAGGTATATGAGTGACATTAGTCGGCATAGGCAGATTGCTTTAGATTTCCTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020101291.1	2.4e-41	receptor-like cytosolic serine/threonine-protein kinase RBK2
Swissprot	Q8RXC8.1	1.7e-26	Protein ROP BINDING PROTEIN KINASES 2
trEMBL	A0A6P5FY46	1.8e-41	receptor-like cytosolic serine/threonine-protein kinase RBK2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G05140.1	52.67	4e-31	131	RBK2	ROP binding protein kinases 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01373	AT3G05140.1	131	51	2	100	230	145	264	52.67	4e-31	131
AfisC1G01373	AT3G05140.1	97	46	3	211	303	368	458	42.27	3e-12	69.7
AfisC1G01373	AT5G18910.1	130	55	2	101	230	195	312	48.46	8e-30	127

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	101	229	53.9	1.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0006468	P	protein phosphorylation
GO:0008289	F	lipid binding
GO:0007166	P	cell surface receptor signaling pathway
GO:0046983	F	protein dimerization activity
GO:0042802	F	identical protein binding
GO:0009416	P	response to light stimulus
GO:0009623	P	response to parasitic fungus
GO:0009741	P	response to brassinosteroid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009814	P	defense response, incompatible interaction
GO:0009908	P	flower development
GO:0010051	P	xylem and phloem pattern formation
GO:0010449	P	root meristem growth
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0010941	P	regulation of cell death
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0032989	P	cellular component morphogenesis
GO:0048366	P	leaf development
GO:0048522	P	positive regulation of cellular process
GO:0048580	P	regulation of post-embryonic development
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus
GO:0097159	F	organic cyclic compound binding
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network