result

Gene information

Detail information of AfisC1G01385

Location

Gene	Chr	Start	End	Strand
AfisC1G01385	chr1	235919556	235921250	-

Sequences

CDS

Protein

Gene

>AfisC1G01385
ATGATGCCGGCTCAAAGCAATGGACCGCTGTCAGTTCCTCCAGGCTTCCGATTTCATCCAACGGATGAAGAACTGCTTTACTACTACCTAAGGAAGAAAGTGGCTTACGAAGCCATTGATCTCGATGTCATTAGAGACATTGATTTGAACAAACTCGAGCCATGGGATCTCAAAGGTAACTTAGAAAATGTTGCCCTAATATACATCCATATATTTCGTTTTCTTTTTCTTTAAGGAAAAAAAAAACTGTAACAATACATATATTGCATGCAGAAAAGTGCAGAATAGGAACAGGCCCTCAGAATGAATGGTATTTTTTTAGCCACAAGGACAAGAAATATCCAACAGGGACTCGAACAAATAGAGCAACTATAGCAGGATTCTGGAAAGCCACAGGCAGAGACAAGACTATTCATCTGAGTAATGCAAAGAGGATAGGAATGAGGAAAACACTAGTTTTTTATACTGGAAGAGCCCCACACGGCCAGAAGACCGACTGGATCATGCATGAGTACCGTCTTGATGAAGCCTGTTCTGATGTTCAGGTACTAATTTATTTATACTACTAGTTTTAAGTTATTTTAAAGTGTTGTTTGGTTTTCATTAACGTATTATTATCTTCATCTAGTGAAATTTTTTGTACTAGGTTAATTAATTATTCTTCCACCTTTCTGTTTGATCAGTCTCCCTTTCTGATGATTCTAAAGTAACGGAACTGATGTTATGTTCACGTTTCCATAATAGTTTTTCCACTGCACTGGAAAAAAATAGGAAATCGTTTGCTGTTCCAGTAGTTTTCCTTTATGCTTCATGTATAAGGAGCATCAACTAGTAGGAATTATGTGCTTGTAACTAAATGTTATGGATTCTAGTCCTTCAGGCTTCAAGCATATACAATAGTAAAGTGTTTTTTCTTTCTTTCTTTTGTCTTCTTTTTTGCTTTTCCTTTTCCAAAAAATAATAATAATAATAAAATAAAATATAAAAAAACCGCATATATGTTGATATATATTGGATCACTAGGTATAACCAGTGTCAAAGAGATTTGTACTTGGAATATCTTCATTCACATACATAAGCATTCATGGTTTTACTGGTAATCTTCAACATATGTAATTATTATTATGTTTATAGAAATCTAACATGGTACATTAAAAATTGCAGGAAGATGGATGGGTGGTGTGTAGGGTATTCAAAAAGAAGAATCTACAAAGAGGAATGATGCCACCTGAATCATTAATGATCCAAGATCAAGAAGATCGATTCAACCACTTTCGGGCATCAGCAGGTGGATCCAACTCATTTATCGAACACAAACACAGCAACTACCAAATGAACGGTCCATGCGACTTCACCTTCGATAACTCAATGCAACTCCCACAACTATTCAGTGCTGAATCTTCCAACAACACTAATTTCTTGCCTCCTTTGATGAATCCTAGTACTATATCTTTAAGTTCACTAGACCTGGAATGCTCCCAAAACCTTATGAAACTCACTGGAGGTGATTTGTCGATTTTGGATAAGTTATTGCAGGCGTCGCAACAAAACACGGATCAAATGTTCCATAACAATATCAAGAGTGATACAACCAACACTACTGCTGCTGCTACTCCAACTACTAATGCAAACCAGGGATTTCCATTTCAGTATCTTGGTGGTGATGCTAATGATCTTTTCAAGTTTCCTAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268068.1	1.9e-124	NAC domain-containing protein 76-like
Swissprot	Q9MA17.1	1.3e-85	NAC domain-containing protein 33
trEMBL	A0A5P1FRZ8	1.4e-124	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G79580.1	53.46	2e-94	342	ANAC033;SMB;URP7	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01385	AT1G79580.3	361	123	7	8	325	13	371	53.46	2e-94	342
AfisC1G01385	AT1G79580.2	361	123	7	8	325	13	371	53.46	2e-94	342
AfisC1G01385	AT1G79580.1	361	123	7	8	325	13	371	53.46	2e-94	342

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	13	141	97.1	7.6e-28

Gene Ontology

Accession	Ontology	Name
GO:0003002	P	regionalization
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005829	C	cytosol
GO:0009531	C	secondary cell wall
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0009809	P	lignin biosynthetic process
GO:0009901	P	anther dehiscence
GO:0010029	P	regulation of seed germination
GO:0010047	P	fruit dehiscence
GO:0010200	P	response to chitin
GO:0010455	P	positive regulation of cell fate commitment
GO:0044212	F	transcription regulatory region DNA binding
GO:0010981	P	regulation of cell wall macromolecule metabolic process
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045491	P	xylan metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0071365	P	cellular response to auxin stimulus
GO:0071555	P	cell wall organization
GO:0090058	P	metaxylem development
GO:0090059	P	protoxylem development
GO:0090400	P	stress-induced premature senescence
GO:0090602	P	sieve element enucleation
GO:0097525	C	spliceosomal snRNP complex
GO:1900057	P	positive regulation of leaf senescence
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:1904250	P	positive regulation of age-related resistance
GO:1990110	P	callus formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network