result

Gene information

Detail information of AfisC1G01413

Location

Gene	Chr	Start	End	Strand
AfisC1G01413	chr1	240000318	240003034	+

Sequences

CDS

>AfisC1G01413
ATGGAAGAAGAAACCAGTTCTTGGGTTAGAAGAGCAAAACTATCAGAAACAGTAATACGAAGATCGAATTCAACAAGGGAGTCGCTAATCAATCCAAATTCTTCCTCTAAATTCTCGCGTGATTTGAATTTTAAAAGCTTTAGTTTGGAATCAAAGCCAAGAAGTTTCAATCTAGACAGGTTAAAAATTCCTTTGCCGAAGCCATTTGTTCAAGAACCTCAATCATCAAAACTTGATACTAAACCTGAATTGGTCTCCAATCAATCTGATTATGAATCAAAAAACAAAGAAATGAATGTATCTTCTTACTCTGATGTAAAACAAAAACCAAAACCTTCAAGTTCAGATACAGAGGCATTCAGCTTTTATCCAGATGCAAGTTTAAAACTGAGTTCAAAATGGTCTGATGCAACTCCAACACCACCAACTCCGACTTTGATCACTAAATCTAGTAACTTCTCTTTCCACAACGTGGAAAGTTCTAGATGGTTAAACTCAAGTAACATTCCAATCACCCCTTCTTTCAAAGCAAATTCAAATGATCAAGAAACTATAACGAAGAGAAGATCACTATCTCCACTACCAACTACGATGCTTTCAGATGTTTTCCATGAAGCAAAGTCAATCGGTAAAAGGTTTTCAACTCCACCAAGGAAGAAGAACTTGCAAATCACAACAAATAGAGCAGAGTTAAGTCCTATGAAACACTTGTCTTCTTTAAGAGCTGCTGCAGCTGACAAATTGAAAAGAGATAGAAAAGTCAATGCTGTGGATTGTATCGATGAATGGATGATCGACCTTTCGAAATTGTATTTGGGACTTAGATTTGCTGCAGGCGCTCATAGTAAATTGTATCATGGCATGTATAATGATAAAGCTGTGGCTGTTAAGATTATTCGCCAACCTGAAGATGATGAAAACGGATTAATGGCCGCCCGACTTGAAAATCAGTTTGTTAGAGAAGTTTCTTTGCTATCCCAACTCAGGCACCCTAATGTGATCAAGTTGATAGGAGCTTGCAAAAACCCACCAGTATTCTGTGTAATAACTGAATACTTATCTGGAGGTTCACTAAAGGCATACCTACACAAATACGAGAATAAGTCGCTGCCTTTAGGAAAACTAGTATCGATATCGCTTGAAATAGCTAAAGGGATGGAGTATATTCATTCACAAGGAGTGGTTCATCGTGACTTGAAACCTGAAAACATTCTGTTCGATCAAGATTCAAGTGTGAAGATAGCAGATTTCGGGATAGCAAGCAATGAGAAGTATTGCAATGCAGTGTCCGATGATGTAGGGACTTATAGATGGATGGCACCTGAAATGATAAAGCATAAAAGTCACTGCCGTAAAGTTGATGTGTATAGTTTTGGGTTGCTTTTATGGGAGATGGTTACTGGAAGAGTTCCTTATGAGGACATGACTCCTATTCAAGCTGCCTTTGCTGTAGTTAACAAGAAATTGAGGCCTGTGATTCCTGAAGAATGTCCATCGTGTTTACGAGCTTTGATGGAACAGTGTTGGGCTTCAGTTGCGGAGAAAAGACCAGAGTTTTGGCAGATAGTGAAGTTTCTAGAACATTTGGAAGTTGCTATCAGTAAGGATGGATCACTGGACAGTATTCGGAACTTGTCTGCCAGCGATCATAAGAAACTGATGTTGCAATGGATGAATCCAAAGGTTAAACACACTAATGTAGATGTCAAGGGATCATTGAATCCTAGATTCTTGTGA

Protein

Gene

>AfisC1G01413
GTAGAATCCAACAAAAATAAACGAACATAACACGTAATTTGCAAGCGAACTGCTCCTCCACTTTCTTTTGTTCTTCCTCGTTTTCACAGATGCTGGAAAAGAGATAGCTCGGTATCTATCCTCGGTATGTTTATTCTCTCTGTTTCCAGGAAACTTCCATCAGTTTCTACCAATAGATATTAGATGTTCAATCTTCTCATATTTGCTCTTGTTATATTGTCGCTTTCATTTCATTTGTCCATGCATTTGATCAATTTCCCGTGAGAAACATGTCTTTTTTTGTTTTCATTCTCTCTGTTTATGCTATATAATTCATAACTTACTATTTCCCGTGAGAAACTTTTTTCATTTAAATTTCTTCTTTTAGATTTTCTAAGAACCCACTTCTTGAATGGAAGAAGAAACCAGTTCTTGGGTTAGAAGAGCAAAACTATCAGAAACAGTAATACGAAGATCGAATTCAACAAGGGAGTCGCTAATCAATCCAAATTCTTCCTCTAAATTCTCGCGTGATTTGAATTTTAAAAGCTTTAGTTTGGAATCAAAGCCAAGAAGTTTCAATCTAGACAGGTTAAAAATTCCTTTGCCGAAGCCATTTGTTCAAGAACCTCAATCATCAAAACTTGATACTAAACCTGAATTGGTCTCCAATCAATCTGATTATGAATCAAAAAACAAAGAAATGAATGTATCTTCTTACTCTGATGTAAAACAAAAACCAAAACCTTCAAGTTCAGATACAGAGGCATTCAGCTTTTATCCAGATGCAAGTTTAAAACTGAGTTCAAAATGGTCTGATGCAACTCCAACACCACCAACTCCGACTTTGATCACTAAATCTAGTAACTTCTCTTTCCACAACGTGGAAAGTTCTAGATGGTTAAACTCAAGTAACATTCCAATCACCCCTTCTTTCAAAGCAAATTCAAATGATCAAGAAACTATAACGAAGAGAAGATCACTATCTCCACTACCAACTACGATGCTTTCAGATGTTTTCCATGAAGCAAAGTCAATCGGTAAAAGGTTTTCAACTCCACCAAGGAAGAAGAACTTGCAAATCACAACAAATAGAGCAGAGTTAAGTCCTATGAAACACTTGTCTTCTTTAAGAGCTGCTGCAGCTGACAAATTGAAAAGAGATAGAAAAGTCAATGCTGTGGATTGTATCGATGAATGGATGATCGACCTTTCGAAATTGTATTTGGGACTTAGATTTGCTGCAGGCGCTCATAGTAAATTGTATCATGGCATGTATAATGATAAAGCTGTGGCTGTTAAGATTATTCGCCAACCTGAAGATGATGAAAACGGATTAATGGCCGCCCGACTTGAAAATCAGTTTGTTAGAGAAGTTTCTTTGCTATCCCAACTCAGGCACCCTAATGTGATCAAGGTATGTTACTATATTATTATTTTTTTCTTCTCCTTTTTCTTTTCTAATGAGAAAGTATGTTAAACATTCTGAGATTACAACTCTTTCAAGGTGGATGTTACGTTTTATTTTGTAATGAAAACCTTCTACTGTAGAAAACAAGGAGATTTCTTTGTATTGTTGCATAGGAAAGATCAAAATGTCCATGCTGAAGAATTAATACTATTTTGTACTCCGCGATGAGAATTTTAATCACTTCTAGTTCTATGTAATAATATGTTGAATTTGAGACAGATTCAGTTTCCTGTTCTTACTGTTACTGATTATTGTTGATAAAAATGTAACATGCAGTTGATAGGAGCTTGCAAAAACCCACCAGTATTCTGTGTAATAACTGAATACTTATCTGGAGGTTCACTAAAGGCATACCTACACAAATACGAGAATAAGTCGCTGCCTTTAGGAAAACTAGTATCGATATCGCTTGAAATAGCTAAAGGGATGGAGTATATTCATTCACAAGGAGTGGTTCATCGTGACTTGAAACCTGAAAACATTCTGTTCGATCAAGATTCAAGTGTGAAGATAGCAGATTTCGGGATAGCAAGCAATGAGAAGTATTGCAATGCAGTGTCCGATGATGTAGGGACTTATAGATGGATGGCACCTGAAATGATAAAGCATAAAAGTCACTGCCGTAAAGTTGATGTGTATAGTTTTGGGTTGCTTTTATGGGAGATGGTTACTGGAAGAGTTCCTTATGAGGACATGACTCCTATTCAAGCTGCCTTTGCTGTAGTTAACAAGGTATAATGGTTTCTCATACTCTACAAAGTTAATGTGCATATGCATGTAATCTTATAGATTGTATGTTGACATTCAGAAATTGAGGCCTGTGATTCCTGAAGAATGTCCATCGTGTTTACGAGCTTTGATGGAACAGTGTTGGGCTTCAGTTGCGGAGAAAAGACCAGAGTTTTGGCAGATAGTGAAGTTTCTAGAACATTTGGAAGTTGCTATCAGTAAGGATGGATCACTGGACAGTATTCGGAACTTGTCTGCCAGCGATCATAAGAAACTGATGTTGCAATGGATGAATCCAAAGGTTAAACACACTAATGTAGATGTCAAGGGATCATTGAATCCTAGATTCTTGTGATTATTTTCTTTTTTCTTTCTTTTCTAGTTTTTGCTACTCCTGCAGGTTTTCTTGTTGTAAGTATTGATTTGATACTAGTACAGGGGTGCTGATTGTTCATAATAGTTGTAATATAACTTGTAGTATGCAATATCAATAACAGAAGGATGAATGTAAAAAATAAATATAATGAGGTCAGTTTGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010915427.1	7.4e-148	mitogen-activated protein kinase kinase kinase 11
Swissprot	Q2MHE4.1	1.4e-82	High leaf temperature protein 1
trEMBL	A0A6I9QUQ4	5.3e-148	mitogen-activated protein kinase kinase kinase 11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G58950.1	52.37	4e-124	442		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01413	AT5G58950.1	401	163	4	187	559	96	496	52.37	4e-124	442
AfisC1G01413	AT3G46930.1	448	195	8	159	559	4	448	45.31	4e-106	382
AfisC1G01413	AT1G62400.1	297	146	2	261	552	32	326	48.48	3e-84	310

Ortholog group

Species	Genes
Allium cepa	g426318.t1
Allium fistulosum	AfisC1G01413
Allium sativum	Asa7G01366.1; Asa7G01367.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	276	526	222.0	7.3e-66

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0000186	P	activation of MAPKK activity
GO:0000187	P	activation of MAPK activity
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0004709	F	MAP kinase kinase kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005815	C	microtubule organizing center
GO:0006355	P	regulation of transcription, DNA-templated
GO:0042802	F	identical protein binding
GO:0009658	P	chloroplast organization
GO:0009723	P	response to ethylene
GO:0009743	P	response to carbohydrate
GO:0010119	P	regulation of stomatal movement
GO:0018193	P	peptidyl-amino acid modification
GO:0019901	F	protein kinase binding
GO:0043065	P	positive regulation of apoptotic process
GO:0043168	F	anion binding
GO:0043507	P	positive regulation of JUN kinase activity
GO:0048513	P	animal organ development
GO:0048523	P	negative regulation of cellular process
GO:0050793	P	regulation of developmental process
GO:0071310	P	cellular response to organic substance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11912	ppkA; serine/threonine-protein kinase PpkA	EC:2.7.11.1	Bacterial secretion system	ko03070
K11912	ppkA; serine/threonine-protein kinase PpkA	EC:2.7.11.1	Biofilm formation - Pseudomonas aeruginosa	ko02025

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network