result

Gene information

Detail information of AfisC1G01470

Location

Gene	Chr	Start	End	Strand
AfisC1G01470	chr1	246307797	246309111	-

Sequences

CDS

Protein

Gene

>AfisC1G01470
CGCCCAAATCCAGACCTCATCCGAACATTCCAGACTCGTTCTCCATATAAATAACTTCTTTGTCACCCTTTTCTTCATCAAATCAAATTCAATCAAATTCGAGTTTCATTAATCCTAATCCCACGAATTAAAATGCCGTCTCGATCAACCGGAGCAATCGTCCAGCAATGGGATCCGGTCGTCATCTCCCGCCGCAAACCAAAAAGTGCAGATCTGAAAGACCCGAAAGTGGTTAACAGCGCGATCCGTGCCGGTGCGCAAGTCGAGACGATCAAAAAGTTCGACGCCGGTCAGAACAAGAAGAAGGCTGAGCCGGTGGTTAATGCGAGAAAGCTCGACGAACAGACAGAACCTGGGACGCTGAACCGTGTGCCAGGGGAGGTGAGGGCGGAGATTCAGAAGGCGAGGTTGGCGAAGAAGATGAGTCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGAGTGCAGGTGGTGCAGGAATATGAGAACGGTAAGGCTGTTTTAAACCAGGGTGTTTTGGCTAAGATGGAGAAGGTTCTTGGGGTTAAACTAAGGGGAAAGCATAAGTAAATTTGAAGAGTGATAGTATGGGGTTTTTTTTGGGCAGGCATGTTAGTCATGATAAGGCATGTTAGGTTCTGTGTTCATGCTTCTTGTTGAATGCTTTAGGTGCTTGTTTGACGTGCTTTTGATATGAATGAAATAAAGTATGCTATGTTGATAATTTGTTCAAAATTTTAATGGTTTTCTGGATTATTGCTGGGTGCATGACATTTCATTTTACAGTTTATTTCAATACATTTACGTTATGGTACTTCAGAGGATCTCTTCTCTTTGTGCGGAAGTGGATTGTTTAGAATAAGTGGTTCGTAAGCATGTCACGGTTGAGTTTTAATCTGCAACTGAGATTGTAACTTTATATTTCAATCGGTTAAGATTTGATGTTCGATTTTTAATTTTATATTCGCGGTTCGGATGAATTGATTCCAAGTATCTCAATGGAAAAACTCTTTAGGGTTCACGGTTCATTCTTATTTTATTCAACTGTAACGAAGATCAACTCTTGTCTCAGCGGGTGAGGCTAGCGTTAATGAAAATCGATTGGCAAATTTTCCGCCAATATTTCCATTCCTAGTATTCAATGTCTTTCAGTTCTATTTCCACGATTCACAAAATATCGTCCATAGCTTACATGAAATAATTGGTACATATGTCGGTAGTGTTCAAACTGTGATGTTCTATTTAAACAATCATGGTTTTTTTACAAATCATTCTGTTAGTCCCTCTTTATTTGCATACACGGATGAATGTATTGATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_004512966.1	1.7e-48	multiprotein-bridging factor 1c
Swissprot	Q9LV58.1	6.8e-47	Multiprotein-bridging factor 1c
trEMBL	A0A8T3A1E9	9.1e-49	HTH cro/C1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G24500.1	68.97	4e-51	196	ATMBF1C;MBF1C	multiprotein bridging factor 1C

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01470	AT3G24500.1	145	42	1	1	142	1	145	68.97	4e-51	196
AfisC1G01470	AT3G58680.1	137	67	1	7	142	5	141	50.36	9e-34	139
AfisC1G01470	AT2G42680.1	137	69	1	7	142	5	141	48.91	6e-32	132

Ortholog group

Species	Genes
Allium cepa	g491996.t1
Allium fistulosum	AfisC1G01470
Allium sativum	Asa2G06716.1; Asa4G01103.1; Asa6G04159.1; Asa7G01409.1
Arabidopsis thaliana	AT3G24500.1; AT3G24500.2
Oryza sativa	LOC_Os06g39240.1; LOC_Os06g39240.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08523.7	MBF1	Family	11	80	69.8	1.8e-19
PF01381.19	HTH_3	Domain	88	139	47.3	1.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0003729	F	mRNA binding
GO:0004402	F	histone acetyltransferase activity
GO:0005737	C	cytoplasm
GO:0005669	C	transcription factor TFIID complex
GO:0005730	C	nucleolus
GO:0007275	P	multicellular organism development
GO:0008168	F	methyltransferase activity
GO:0009405	P	pathogenesis
GO:0009408	P	response to heat
GO:0009414	P	response to water deprivation
GO:0009737	P	response to abscisic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019216	P	regulation of lipid metabolic process
GO:0043388	P	positive regulation of DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0045446	P	endothelial cell differentiation
GO:0070062	C	extracellular exosome

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03627	MBF1; putative transcription factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network