result

Gene information

Detail information of AfisC1G01481

Location

Gene	Chr	Start	End	Strand
AfisC1G01481	chr1	247521640	247524278	-

Sequences

CDS

Protein

Gene

>AfisC1G01481
AATGAAAAAAGGGTAAATGAATGTCTGGGTTAACAATAAAAAAACAAAAACAAAAAACACATTTTTACGGAATCTATGTAAAAAAAAAGGCAAAAAAGAAAAAGAAAAAGCCTTTTCTTCATACCCTATCGGGTAATAATGTAATTTACAAAATCTAAGCAGAAGATAGAGAACTGACCTTGCTTCCTTCCTCTTTATAAAATCCCAAATCTCTCGCCACTGTCGAGAATCTAAAGAGAAGATAAACAAGCAAATTTGAAGTTTCCCCCTCTGCTCTATATTCTCCCATCTATACGATTATTTTCCACAAGAACAAATTTTGATCCAAAATTTCAACTCTTGATGAGTGGAAAAGAAATGGGGATTAAAAAATTTTGTCCTCAAGGATCTTCTGATGTCTCCGTTCTTATGATCACTAGTTTTTTCCCCACAAGCTTTCTTCCTTTTAGAAGTCGTGTTATTTTGATTAACACGCGTCTACCTTGTTGAAAAGTTTGAGCTTTTCCATTTTCCCTGTCAGTAGAAGTAAACAAGTAAATTATGGCCGGTAGAAGAGTTTACAGAGGTTCAGAAGTGAATGTTTTGTTGCAAAATGAAGATTCTTCTGCTGGAAATTTTCAGGCTTTGCTCTCCTCGGATTCTTCTCATGCTGGATTTGCCGGTAAGTTTATTGCCTTCTGAATCATTTATGTATGTATAGTTGGATATACCATGCTAACGAGAATTTTATAGAAATGTCAAAATTTGGAAACTTGATTAGAATCCTTACCGAGATAGGAAAATTTGACTGTTGGACAAACATTCTTGAGAAGCATACAAATCTAACTGTATGGTTTAACGTAAACTTACTGCATGAGAACCGACTGATTTAATAGATCTATGTTGCAATAAGTTTATTATTTGCCTTCTCTTTGATGAATCTGTCAAGTAAATAAATTGTACATTTATAAAGATGCATGTCTGATACTTGGAAGCTTTTAAATCTGAATCCGTGATTCTTATTTCTATACTAGTGGTGCTTAACTGCTTATGAATATGGTCGATATGCTTATGTATTTAATTCAAAACTTACTTTGTTCTATTTATTTCAGGGTCAAGATCAATGCTAAACTTTGAAGAAGCATGTAATGGAAGAACCATTAGCCAACAGTTTTACATTCCTAGAGAGATAGAAGAGACGATCGAAGAAGATTTAGACGACTGCCTGCACCAACCAGAGAAGAAACGAAGGTTATCCGCCACTCAAGTTCAGTTTCTTGAGAAAAGTTTCGAGGTAGAGAATAAGCTAGAACCCGAAAGAAAAGTTCAGTTAGCCAAAGAACTAGGATTGCAACCAAGACAGGTTGCAATATGGTTTCAAAATCGTAGGGCAAGGTGGAAAAACAAGCAGCTTGAGAAAGATTATGACGTGCTCAAATTAAAATACAACGCTTTGATGGTCGATTACGAGAATATGTTGGACGAGAAGGAAAAGCTTAAAGAGGAGGTATGGACATATATCTCTATAGTTTTTGTTGAATATATATGCTTAGAACTGTAACCTTTGTCTACTACCTGTTAAGCATTATCTTGTTTTCATTATGATTCATAAAGTTGCATTTGCAAATATTCAACAGCTAGCTCATCTTACAAACAAAGTACTTCTACAAGAAAAGCAGAATAACACAGCAGAAACAGTGGAAGTAGACAATCTACTCGATCAAAAATCTGTTATAGACATGAAAAGGGGAGAAAGCCAATTAATAGATGTAGCAGTGAAACAAGAAGCTCAGAGTTCAACAAATAGTGCGGAGTCAGAATCTGGTAGCCCACATGAAACGAGTAGATTAAGAACTGATTCCTTTAATGCATTTGAGGCAACTCATTCTGAAATTTCATATGTTGGAGATAATGAGGAGGTTAAAGGATATCATGAGTTCTTAAAACTTGAAGACCACACTGGAAATTTTGATTTTCCAGTAGAAGATCATCCATTCTGGTCATGGCATTGATATGTCGTATTCATGATGCAGTTTCCTTTTTATTTAGATAGTATTGTGATTAGTATTGAATAAATGAGTGCTTGTTCAAATATTGAATAAGTAGCATTGGCAATATGTAGTTGAGAACTTGTTTGCAGTGTTGCTGTTTAAAACTTTAAATAGAACCTGATTTGTCATGGTTTCGCAAGTAAATGAGAAGTAGTACAACTGATTCTACAGCAATTTTAGTCCTGAACTCCTGAAGCTATGGCACTTTAACGTTTTGGAATATATTTTGGTATGAAATATTTCGTATTCGATTTGAAATTTGAACACTTATGCATTAATTTATAATCATTCTCGGGGAAGTGTTTAATTAAATATATTAAGCAGTACAACATCCTTAATTCAAGATCTTTAACCACCTAATCAAACGTCTTATCGCTGCTATCAGTGAACATTGACAGATTTGTGTATGTGTTTCTCACGGGGCAAAAATAGTTACCATCAGCGTAGAAAAATACATGGTTAAAATATTGGAAGGGACAGAAAAGATAAAACGAAAAATAATTTGGTGTGAAAGTGAATGGTGGAATGTGAAAGCTTGAAGGTGCCTAAGTTCAAGTTTAATGTGGCTCTTTTCCAGCATTAGAAACGTTTTACTATTAATACCTAGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250149.1	2.0e-80	homeobox-leucine zipper protein HAT5-like
Swissprot	A2X980.1	1.3e-23	OsHox16
trEMBL	A0A5P1FVN3	1.4e-80	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	47.12	2e-37	153	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01481	AT3G01470.1	191	93	3	11	200	2	185	47.12	2e-37	153
AfisC1G01481	AT2G22430.1	98	35	0	83	180	61	158	64.29	4e-31	132
AfisC1G01481	AT4G40060.1	112	48	0	83	194	58	169	57.14	4e-31	132

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	84	138	59.8	1.5e-16
PF02183.15	HALZ	Family	139	180	45.1	7.8e-12

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network