result

Gene information

Detail information of AfisC1G01512

Location

Gene	Chr	Start	End	Strand
AfisC1G01512	chr1	255749404	255750832	-

Sequences

CDS

Protein

Gene

>AfisC1G01512
CTACTTTTCTGATCTCTCTCTTCTTCGTTTTTCTTTCTTGATCTTTGCATACCTTTTCTCGTATATATACATAAAAAAGATGTCTTCGTTTTATGATTTTAACCAGCTTTCCCATGTAATCGAAGAAGATGATCATGATCACTTACATGATCCTTACACTACTTTTCCAACACATGATCAATATCCTATGTTCTATAATTTCCACCCTCAAATTCAAGCAACAAACAACTTCAATACTGATCATCATCAAGAGGTACTTATAAGTTTCATATATTAACTTGTTTGGTTGTAAAAAAAAGTTTCTATACACGATCAATTATTTTTTGCAGATTAATATAGATCATGAGATGTATCATGGTCCGTCTGCTGAAACAGAAGACTATGGACGAAAATCAAATCAATGGAAGTCAACAAAGATGAGGTTCACAGGAAAGATGATCGATCCAAAACCTAAACAAAGTATCAAACAGGCCACAAGCGTTCCCGATAGAAAAAGACGCCTGAAACAAGATTTAAGTTCACCAAGTATTACTAACAATAATACAAATGATGGCATCGTTCGGGTCTGCTCAGACTGTAAAACAACCAAAACTCCTCTGTGGAGGAGTGGCCCTTCTGGACCCAAGGTATAATTTATATTTGATCTTATTTGAATAACCGATATAAATTCAGATATATTTTGTTCTTTCCAGAACAAAGAATCTGAATCCTTTTTATTGTATTAATATGTACCCAACATCTCAAACTAATATTGATCTTCTAAGTGTTCAAGAAGAGATGCTACTTAATCAACAAATCATGATCACTGCAACTTTTCACTAATAGTGGTCTAAGGTTAATGCTTATTAGTGCACGTATTCGATATTTCAATCTTTAAAGTATTGATCTCTTGATGTTATAGACACTATGCAATGCATGTGGAATAAGGCAAAGAAAGGCAAGGAGAGCCATGGCTGCAGCTGCAGCAGTAAATGCAGGTTTGATCCCTGCATCGGTGAAGATGACACCGAGTAATAGCAAGAGCAGTCACAAAAAAGCAGTCGAAGCCTCAGATCGCATGATACCATTTAAGAAGAGGTGCAGATTTTCTACTGCAAATAATACAACTACATCTGTTGCTCAGAAGAAGAAACTTTGCTTAGATGACATTGTTATAAGACTGAGTAAGAGTTCCGCTTTTCATAGAGTTTTTCCTCAAGATGAGAAAGATGCAGCTATATTGCTTATGGCTATTTCTTGTGGGCTCATGTGTAGTTGATTAGAGTTATCCTTTTTTTAGCTTTCTTGCTTCACTTTTTCCCCCTTTTTCTCTTTTTGGTTTGCATTTAATTTTGATGTGTTTGAGAGTAATCTGTTGTAGTCTATCAGTGTGCTTGAGATTGTTGTTTGTTGAGTAAAAGATCTCCGAATAAATCATCTATTTTGTGCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009388677.1	2.4e-40	PREDICTED: putative GATA transcription factor 22
Swissprot	Q9SZI6.1	4.3e-26	Protein GNC-LIKE
trEMBL	A0A804I3V4	1.7e-40	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G26150.1	37.50	2e-27	119	CGA1;GATA22;GNL	cytokinin-responsive gata factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01512	AT4G26150.1	216	107	7	77	273	144	350	37.50	2e-27	119
AfisC1G01512	AT5G56860.1	39	6	0	131	169	225	263	84.62	6e-17	84.7
AfisC1G01512	AT1G08010.2	82	36	1	124	205	208	282	47.56	6e-15	78.2

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC1G01512
Allium sativum	Asa6G07030.1; Asa7G01419.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	138	171	60.7	6.4e-17

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network