result

Gene information

Detail information of AfisC1G01527

Location

Gene	Chr	Start	End	Strand
AfisC1G01527	chr1	257509343	257510561	-

Sequences

CDS

Protein

Gene

>AfisC1G01527
GTCAACCCACAGTCAATTGTACCATACAAACTCAAACTGAAGTAACCCCAATGGACATCAACATGCATCAAATTAAAAAAGAAGAGGACGAAGAAGCAGAACAAGCAATGGCGGGTACACCTATGATTAAGTTGCATGAAGTTGGACCACCTCCATTTCTGACAAAGACATATGAGATGGTTGAGAACCCATCAACTGATACAGTCATTTCATGGAGTCAAGCAAGAAACAGTTTCATAGTTTGGGATATCAACATATTTGCTTCAACTATGTTGCCAAGATATTTCAAACATAACAATTTCTCTAGTTTTGTTCGCCAACTCAACACTTATGTAAGTCTATTACTGTACATTTCTTTCGATGCAAGCTCATTTTTATTTTCTTCTAAAACGGAGTGTTTCCACTGCAGGGATTCCGGAAAGTCGACTTCGATAGATGGGAATTCGCCCATGAAGAGTTCTTAGGAGGTCAGAAGCATCTTCTCAAGAACATCAAGAGAAGAAGAAACAGTGACAGTTGCAATACAAAGCTTGTGCTATCACATATAGCTAAAGAGACAGAGCTACAGAAACTGAAAAGGGAACGAACCGTTTTAATGATGGAAGTTATACAGCTCAGGCAACAGCAAAAAAGCTTGAATGAACTGATAGCGAAAATGGAGGGAAGAGTGCAATCTACAGAGAGGAAACAACAGAACATGGTGTCGTTTTTGGAAAAATCAGCTAACAATCCTGAGCTTATTTATAAACTTATGAAGAAAGTTGAACTGGGAAGTTCAGGAAAAAGACGAAGACTGCCTTACGATGCAAATTTTGGAGATACGGATGAATGTGGAGTTGCAGAACGGCATAGAAGCATGTTGAAATGTATAGATGAGAGCTATGATGCAATTACAGCGGATGTTATATGGGATGAACTGTCCAACTGTGAATATTTGGGGAATGAAAACGACTTGTCGGAAATAGACGAGGAAGTGGAAGATGTGAAGCAATTTGTAGAACTAATGGAGTATGATCGTTTTACGCAGTAGAGCAGACTAGAGTTATTTGTTGCCTTATTTTTTTGTTTATTTAAAGTTATTAATGTACATAACTATATGTAAATACTTGTACAGTTTAATTAAATTTGTGGATGTGATCAGTTTTGTTCGGTTACTCTTATTTAGATAAATCATGTATCATGTACATGATTTCCATCCAGCCTGATAAAAATATAAATG

Functional annotation

Database	accession number	e-value	annotation
nr	PKA58982.1	2.4e-65	Heat shock factor protein HSF30
Swissprot	P41152.1	2.0e-56	Heat stress transcription factor
trEMBL	A0A2I0ATY0	1.7e-65	Heat shock factor protein HSF30

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G26150.1	48.84	1e-64	243	ATHSFA2;HSFA2	heat shock transcription factor A2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01527	AT2G26150.1	258	115	4	24	267	33	287	48.84	1e-64	243
AfisC1G01527	AT3G22830.1	234	100	3	24	236	50	282	47.86	1e-58	223
AfisC1G01527	AT3G51910.1	205	88	3	25	222	19	216	50.24	3e-56	215

Ortholog group

Species	Genes
Allium cepa	g207286.t1
Allium fistulosum	AfisC1G01527
Allium sativum	Asa7G01432.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	36	125	107.8	2.9e-31

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0042802	F	identical protein binding
GO:0009644	P	response to high light intensity
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032268	P	regulation of cellular protein metabolic process
GO:0034605	P	cellular response to heat
GO:0034620	P	cellular response to unfolded protein
GO:0042542	P	response to hydrogen peroxide
GO:0044444	C	cytoplasmic part
GO:0071456	P	cellular response to hypoxia

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network