result

Gene information

Detail information of AfisC1G01540

Location

Gene	Chr	Start	End	Strand
AfisC1G01540	chr1	258920978	258923450	+

Sequences

CDS

Protein

Gene

>AfisC1G01540
ATGGATGCCTCCTTTTCACTAAAATCTGTTGTTCAGCCGAAGGGTTTTCATAGTCTCACCATGTATTATGATCCTTATAATCATAATATTTTAGGGAACAGCTCATCTACTTGTCCTCTTACGTTCGATCAGAGCAACGACGCCAGCTTGATTTATTCAAGTGGTGTTAATAATGCTAGAAATAATCTTGGGGCAGCTATAGGTAGCTTTCATAATAACGTAGGGTTCTCGTTCTACGACAAAAATCAGCAAAGTTTGGGGCAAGTCAACAATCAGTTTATGATTGGACAGGCACACGCCAACGATGTTTATCCTCAGATTTATTCTTCTGCAAATCAAATGGAGTTTTGTAGTCCATTTCTTCCTTCCAGTGACTTCTCAAATCATGTTGCGGAGCATAGTAACTCATTATTTGATCACAGTGTTAACATTAGTGGCGATTACTTGCAAGTGAATGAAGCTAGTGCTAATCAAGCCAATAAGAGAAATGTGTTAAAAGGGCAGTGGACTGCTGAAGAAGATCAGTAAGAAATTTGACTATCAATTCAAGGGAAATGTTAAAATGTGTCCCAAGAGCACATGTTAGGTTACATTAGTTCATGAGATTCATATGCATAATATTAATTTTATTTATGTTCTAAGGATATATTTGGTATTTATAATTTTATTTCAGGTTTCAATGCAACTTAACATGTTAAATTCTTAACTTATCTATTTTCCATTGCTGGTTACTGTGTTATTTTTAATTATGCTTTTGTTTTATTTTGTATTTTGTTTTTTTGACATACCTTGTTATCTATTTATTACTATCAAACTTAAAGTTGACTTAATTAATGCTGATGGTTACTTATACTTCTGTAGATTGTTAGTTCAGTTGGTGAACAGTTATGGAGTGAAGAAATGGTCTCGTATAGCTCAATTGTTGGGTTTCCGAACTGGGAAACAATGCAGAGATAGGTGGCACAACTGTTTGAGGCCGGACATTAAGGTTTGATTTTATTTATTTAGTTTTTTCTTTTTGCTATTCCATATTGTATGGCCACTTCAATTTAGAATCACCATGATCTGTATTTTTTACATACATGAATTACTTTACAGATACAAGGGGCTTTATCTTGAATTGATTATAATTTACATCATCTCATCTTCAAACTTAAGGTGTTAATCACTTTTATGGCAATCTGGAAACCCAATTTTAACATCATATTATAGTTCCACGTCTTAAAATCTAGTATTAGAACGGTTAAGCTTTCACCTCAAACTATATCATGACCTTCTGAGGAATAAAAGGTCATACCCAAGCTTTGTCTTGCTAAAATTAACACAAACAATACAATATGCACTTACATATGTGTACACACACACGTGCACGCGCACGTACAGATACACACACATCAAGATTCATGTCTGATTCTTTATGAAATAGCTCTTGTAGATCAGTTAAAAATATTATATCATAGTTTTTATTAATTTTAAGCTTAAGACATATCATAATATTTGCTTAATGGGATGTATATGCTATTTGTCATGGTCATAAATCATAGTTTTTATTATTTGCTCGATGAAATATCTTTTGTTCATTCTATGTTTTTATTTAACTACATAGTAGCAAGGTGAGGTTCACAACCAATATACAATCCTTTTATTCACATAGAATTTCTTGTAAAACGATAATAATATATTTTAATTGCTGTGAACACTTGTAGAAAGATCCGTGGAGCGAGCAAGAGGACAGAGTACTGATCAATGCTCATACAGAGTTGGGCAACAAATGGTCAGAGATTGCAAAACAGCTTCCTGGCCGAACCGAAAACTCCATAAAGAACCGCTGGTACTCCAACATAAAGAAGCTGTTTCCTCGCAGCACCAACAACCGTACATATCGAAGATGCCCAAAACCTGGTGCAAGTCTCCTTCAGAATTACATGCAAAGCTTAGCAGAGGTTTCTCCTACACTTGTATTCCCTGAAAAGAAGAAAGGAAACCACAGCAGATCATCTTCAAGTTCAAATATCATCGACTATACTAGTCATGGAAATGTGAACATGCCTGAGATGTATTGGTCTGCAGCGGCAATGCCTTCTTCGCTTGTGATGTCTCAAAATGTGGGCGTCTTGGATAACAGCTTCATCTTTTGAATTGTGTTCGAGTTGCAATTAATGCATCGGTTGCTATGTTTCTTTTAGCTTTGGCATTGCTGTATGTTTCTTCAAACTTATGTAGTTCCTTCATAAACTTTGTTGCCTAAGTCTATTTGTTGTACTTGCATGGTTTTTGTTGCTAATTGATGGAAGATTGGGCGTCAACTTATGTGAAGGTCAAATCTTGATGTTTTGCGATGGCTAGAATGTTTCTTTTATTGTTGCATAGTTTTGTTGTTTGATTTGTTTTATCCATGATTTTTCACATAAGATGATTCAGGGATATTGCACTTCAAAATGATGAAGGATTCATAAATGATCAAGTGAAAATT

Functional annotation

Database	accession number	e-value	annotation
nr	KAF6991575.1	3.1e-43	hypothetical protein CFC21_008650
Swissprot	Q9S7L2.1	1.3e-41	Myb-related protein 98
trEMBL	A0A3B5Z4H3	2.2e-43	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18770.1	59.85	2e-44	176	AtMYB98;MYB98	myb domain protein 98

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01540	AT4G18770.1	137	50	2	158	294	209	340	59.85	2e-44	176
AfisC1G01540	AT3G27785.1	135	59	1	161	295	184	317	55.56	1e-41	167
AfisC1G01540	AT5G58850.1	148	65	2	155	294	94	241	50.68	3e-39	159

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	169	226	71.7	4e-20

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0010183	P	pollen tube guidance
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045697	P	regulation of synergid differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0045995	P	regulation of embryonic development
GO:0051302	P	regulation of cell division
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0055089	P	fatty acid homeostasis
GO:0090307	P	mitotic spindle assembly
GO:1904095	P	negative regulation of endosperm development
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network