result

Gene information

Detail information of AfisC1G01548

Location

Gene	Chr	Start	End	Strand
AfisC1G01548	chr1	259937504	259939636	+

Sequences

CDS

Protein

Gene

>AfisC1G01548
ATGGATGCCTCCTTTTCACTAAAATCTGTTGTTCAGCCGAAGGGTTTTCATAGTCTCACCATGTATTATGATCCTTATAATCATAATATTTTAGGGAACAGCTCTTGTCCTCTTACGTTTGATCAGAGCAACAACGCCAGCTTGATTTATTCTAGTGGTGTCAATAATGCTAGAAATAATCTTGGGGCATCTATAGGTAGCTTTCATAATAACGTAGGGTTCTCGTTCTACGACAATAATCAGCAAAGTATGGAGCAAGTCAACAATCAGTTTATGATTGGACAGGCACATGCCAATGATGTTTATCCTCAGATTTATTCTTCTGCAAATCAAATGGAGTTTTGTAGTCCATTTCTTACTTCTAGTGACTTCTCAAGTCATGTTGCGGAGCATAGTAACTCTTTATTTGATCACAGTGTTAAGATTAGTGGCGATTCCTTGCAAGTTAATGAAGCTAGTGCTAATCAAGCCAATAAGAAAAATGTGTTAAAAGGGCAGTGGATTGCTGAAGAAGATCAGTAAGAAATTTGACTATCAATTCAAGGGAAATGTTAAAATGTGTCCCAAGAGCACATGTTAGGTTACATTAGTTCATGAGATTCGTATGCATAATATTGATTTTATTTATGTTCTAAGGATATATTTGGTATTTATAATTTTATTTCAGGTTTCAGTGCAACTTAACATATTAAATTCTTAACTTATCCATTTTCCATTGCTGGTTACTGTGTTATTTTTAATTATGCTTTTTTTTTTTAATTTTGTATTTTGTTTTCTGACATACCTTGTTATCTAATTATTACTATCAAACTTAATGTTGACTTAATTAATGCTGATGGTTATTTATACTTCTGTAGATTGTTAGTTCAGTTGGTGAACCGTTATGGAGTGAAGAAATGGTCTCATATAGCTCAATTGTTGGGCTTTCGAACTGGGAAACAATGCAGAGATAGATGGTACAACTGTTTGCAGCCGGACATTAAGGTTTAATTTTATTTATTTAGTTTTTCCTTTTTGCTATTCCATGTTGTATGGCCACTTCAATTTAGAATCACCATGATCTGTATTTTTTACATACATGAATTACTTTACAGATACAAGGGGCTTTATCTTGAATTGATTATAATTTACATCATCTCATCTTCAAACTTAAGGTGATGAGTACTTTTATGGCAATCTGGACACCCAATTTTAACACCATATTATAGTTCCACGTCTTAAAATCTAGTATTAGAACGGTTAAACTTTCACCTCAAACTATATCATGACCTTCTGAGGAATAAAAGGTCATACCCAAGCTTTGTCTTGTTAAAATTAACACAGAATACAATATGCACATACATAAGTGTACACACACGCGTGCACGCGCGCACACAGATACACACACATCAAGGTTCATGTCCGATTTTTTATGAAATAGCTCTTGTAGATCAGTTAAAAATATCATATCATAGTTTTTTATTATTTTTAAGCCTATGACATATCATAATATTTGCTTAATGGGATGTATATGCTATTTGTCATGGTCATAAATCATAGTTTTTGTTATTTGCTTAATGAAATATCTTTTGTTCATTCTATGTTTTTATTTAACTACATAGTAGCAAGGTGAGGTTCACAACCAATACACAATCCTTTTATTCACATAGAATTTCTTGTAAAACGATAATAATAAATTTTAATTGCTGTGAACACTCGTAGAAAGATCCGTGGAGCGAGCAAGAGGACAGAGTACTGATCAATGCTCATTCAGAGTTGGGCAACAAATGGTCAGAGATTGCAAAACAGCTTCCCGGCCGAACTGAAAACTCCATAAAGAACCGCTGGTACTCCAACATAAGGAAGCTGTTTCCTCGCAGCACCAACAACCGTACATATCGAAGATGCCCAAAACCAGAAGCAAGTCTCCTTCAGAATTACATGCAATGCTTAGCACAGTTTTCTCCTACACATATATTCCCTGAAAAGAAGAAAAGGAACCACAGCAGACCATCTTCCAGTTCAAATATCATCGACTATGCTAGTCATGAAAATGTGAACATACCTGAGATGTATTGGTCTGCAGCAGCAATGCCTTCTCCGTTTATGACGTCTCAAAATGAGGGCGTCTTCGATAACGGCTTCATCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022921379.1	3.4e-42	transcription factor MYB98-like
Swissprot	Q9S7L2.1	3.6e-41	Myb-related protein 98
trEMBL	A0A6J1E0A8	2.4e-42	transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18770.1	57.66	9e-44	174	AtMYB98;MYB98	myb domain protein 98

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01548	AT4G18770.1	137	53	1	156	292	209	340	57.66	9e-44	174
AfisC1G01548	AT3G27785.1	230	121	5	71	293	99	317	39.57	3e-40	162
AfisC1G01548	AT5G58850.1	164	81	2	153	308	94	257	45.73	3e-37	152

Ortholog group

Species	Genes
Allium cepa	g81074.t1
Allium fistulosum	AfisC1G01548
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	167	224	65.5	3.5e-18

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001101	P	response to acid chemical
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009725	P	response to hormone
GO:0010183	P	pollen tube guidance
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0016363	C	nuclear matrix
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045697	P	regulation of synergid differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0045995	P	regulation of embryonic development
GO:0051302	P	regulation of cell division
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0055089	P	fatty acid homeostasis
GO:0090307	P	mitotic spindle assembly
GO:1901700	P	response to oxygen-containing compound
GO:1904095	P	negative regulation of endosperm development
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network