result

Gene information

Detail information of AfisC1G01669


Location
GeneChrStartEndStrand
AfisC1G01669chr1286753679286795665-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268792.10.0e+00paired amphipathic helix protein Sin3-like 4
SwissprotO04539.32.8e-290Paired amphipathic helix protein Sin3-like 4
trEMBLA0A6P5FUL60.0e+00paired amphipathic helix protein Sin3-like 4

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G70060.147.820.01086SNL4SIN3-like 4

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02671.18PAHRepeat509460.79.6e-17
PF02671.18PAHRepeat13117457.31.2e-15
PF02671.18PAHRepeat31635932.56.3e-08
PF08295.9Sin3_corepressDomain429520122.64.7e-36
PF16879.2Sin3a_CFamily9971240173.57e-51

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006952Pdefense response
GO:0004672Fprotein kinase activity
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0009941Cchloroplast envelope
GO:0010629Pnegative regulation of gene expression
GO:0031324Pnegative regulation of cellular metabolic process
GO:0032550Fpurine ribonucleoside binding
GO:0032559Fadenyl ribonucleotide binding
GO:0032991Cmacromolecular complex
GO:0043168Fanion binding
GO:0043565Fsequence-specific DNA binding
GO:0044763Psingle-organism cellular process
GO:0048513Panimal organ development
GO:0048518Ppositive regulation of biological process
GO:0051716Pcellular response to stimulus

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11644SIN3A; paired amphipathic helix protein Sin3aEC:- Mitophagy - yeastko04139
Thyroid hormone signaling pathwayko04919

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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