result

Gene information

Detail information of AfisC1G01836

Location

Gene	Chr	Start	End	Strand
AfisC1G01836	chr1	318688274	318689579	+

Sequences

CDS

Protein

Gene

>AfisC1G01836
ATGTATATTGCAAAGAGTTTAATGGAAGACAGTATGCCTAACAGTGGCAGTAGTAGCTTCTGGAAGAAAGGGCCGTGGACACCCGAAGAAGATAAGATATTGATGGATCATGTTAAAATCCATGGCCAAGGAAAATGGAACTCTGTTTCCACTCTTACCGGTATATTTTCTTTACTAGTTAAATATTTTATAACAAAAGGATAGCTCATCTTCTCACAGTAGTGATATGCCAATGAAAAATCTAAGAATTCTGTTAATAACCAAACGTGTGGAAATTTTCTGACACAATTTCTCAATGGAAAATACTACTTTACCCGAAAAACCGTTTGTCACTTCATACGAAAGCAATCTTAATCCTTCATTTTGTCCAGCCCCCCTGATTTCCACCTTTAATTTTCAGATCCGCAAATTCTTACACCTCCTTTTCGGTCACTGTAGCATCCCTCTTTCTCAATAGTTAACTGACTTTTTTAAATGTTTACCGGCAGTGTCCGGTAAAAATTACCAAACGTGTGGAAATTTTCTGACACAATTTCTTTTTTTTCTTTTTTTTTTTTTTTCTTTTTTTTGCGTAAATGAATACGATATCACATTGTAGTTGTACACTTGAATGCTAGCTTTCTTCACTGAAATCTATCATATATGTATATTATAAACATCACCAATACAGGATTGAGGAGGTGCGGAAAGAGTTGCAGGCTAAGATGGGTGAACTATCTAAGACCTGATCTCAAAAGAGGAAAAATTACCTCTCATGAGGAGAAGATCATTATAGACTTACATGCAAGATGGGGCAACCGGTAATTATTTTGCTTATGCTATTTTCTTTATTTCAATGAGATATGTGTAAGCCATTTTTTAATCCAAGTTTTGTAACAAAACTTGCACTAAATTTGGTAGATGGTCGACGATAGCAAAATGCTTGCCAGGCAGAACAGACAATGAAATCAAGAATTACTGGAGGACACATTTCAAGAAAGAAAAATCCACAAATAAACACAATAACAGACGAGCTCTTTTCCTAAAGCAACAAGAAGAGATGAAGAAACAGCTGCTTTATGACGAATTTCAGAACAAACAGTTTGAGTACAGTGATGTTATGAATCTGGAAGCTAAGCCTGGAACAATTTCAACGGAAAATGATATGCAGGAAATATCATATGATATTTTTCAAGATATGGATGAAATTTTTGGTATCCAGGATTTCAATGGAAGTGGTGGGTGGACAAGCGAGGAATGCTCGAATCAAACATGGGAAAATTTGTGGGATCTTGATGATATGCAAGATCAAGTTTTTTACTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020672048.1	4.7e-53	myb-related protein 305-like
Swissprot	P81391.1	8.3e-39	Myb-related protein 305
trEMBL	A0A2I0X7W3	3.4e-53	Myb-related protein 305

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13480.1	68.55	9e-49	189	AtMYB79;MYB79	myb domain protein 79

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01836	AT4G13480.1	124	37	1	20	141	5	128	68.55	9e-49	189
AfisC1G01836	AT3G24310.1	104	24	0	21	124	18	121	76.92	1e-47	186
AfisC1G01836	AT3G30210.1	212	106	5	22	229	28	233	45.28	1e-43	172

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	23	70	60.2	1.4e-16
PF00249.28	Myb_DNA-binding	Domain	76	120	52.9	2.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048629	P	trichome patterning
GO:0048765	P	root hair cell differentiation
GO:0080086	P	stamen filament development
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network