result

Gene information

Detail information of AfisC1G01908

Location

Gene	Chr	Start	End	Strand
AfisC1G01908	chr1	329641032	329642260	-

Sequences

CDS

Protein

Gene

>AfisC1G01908
TCTTATTCTTTCCTCCCACTCCTCACTCTCTTGCGTTTTCCACCTACTTATAATCATATAAGTAAACCTAATTCGACTTACTTATATTTGTCCAACCAATTACCAGTACATACTTGCTTAGTTGCTTCTACATGACTTCAAGTAAGTGGGCGGACTTATTCATAGTTTGCTACTTATTCACACAAAGAGAGAGGGCGGCTTTAATTTGACTCCTACCTCTTATATATAACACCTCCACTCCTCTCTTTCCCATTTCATTACATTTCATTTCATTCACTCCTACTTCTAAAACTAACTAATACTCATACTCACTCTTCTAATTATGGAAGCAATATCATACTCTCATAGTAGTAGCAGCACAGGCGAGTGCGCACACCCTCCTATAACAAAGAAGAAGAGGACCCAACGCCCAAAGTCTACTCCTATCGCCACATCATCAAACTCTGAAGTCGATGACATCATCTCCTCTACCACTACCGAGGAAGATGAAGACATGGCTCGGTGCCTCATCCTTCTCGCCCAGGGGAATACTTCCAATCAACACGCCACAAGTGGTGTTGTCGAAAAAGACGGTGTTTATGTTTATGAATGTAAGACTTGTAGTAGGAGCTTTACTTCGTTTCAAGCTCTCGGCGGGCATCGCGCTAGTCATAAGAAACCGAAGATGGAAACAACAGCAGCAGCAGACCAAGAAGATCGAAAAGATAGCTTTGATTTTCATATTCTCAAGAACAATAACAATAGCAATAGCAAGAAGATGAGGGTGCACGAATGTTCGATATGCGGAGCTGAATTTTCATCGGGGCAAGCTTTGGGAGGACATATGAGGAGGCATAGGCAAATTATTTCGCCTGAAAAGTCGAATGCAAGTGAAGAAGTAGTGATAAAGAAGGAAGAGGAAAAACGGGTATTCTCTTTGGATCTTAATTTGCTGGCACCTTCAGATGAGAATCCAACGGCTATGGGGTTCTTGTTAGGCGATCAGCGGTCCACAATGTTTTCGTCCCCGCTCATAGACTGTCATTATTGATCTTGAAGTGAAGCGGCAATGGTTTATTTATTTATTCTCTTTTTCATGAATGGAAATATTGGGATTATATTGGGTCGGGATTAATGTGAATCACTATTTCGGTTCTTAATTGATATAAAATGAAAAAAATGAAAATTTCTATGTTTGATTCTTTGTGAGAGTTGAAGTTAGTTGTTTTTTATTATTTTTCTAGTATGCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010910785.1	7.1e-33	zinc finger protein ZAT5
Swissprot	Q681X4.1	2.6e-27	Zinc finger protein ZAT5
trEMBL	A0A6I9QM51	5.1e-33	zinc finger protein ZAT5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28200.1	40.83	2e-36	149		C2H2-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01908	AT2G28200.1	240	86	10	40	235	59	286	40.83	2e-36	149
AfisC1G01908	AT5G04390.1	270	84	12	53	235	95	362	35.93	3e-33	138
AfisC1G01908	AT5G03510.1	226	93	7	52	235	67	292	40.27	7e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	87	112	46.7	1.9e-12
PF13912.3	zf-C2H2_6	Domain	148	173	50.0	1.7e-13

Gene Ontology

Accession	Ontology	Name
GO:0003006	P	developmental process involved in reproduction
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0040007	P	growth
GO:0008270	F	zinc ion binding
GO:0009408	P	response to heat
GO:0009611	P	response to wounding
GO:0009631	P	cold acclimation
GO:0009643	P	photosynthetic acclimation
GO:0009737	P	response to abscisic acid
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0048519	P	negative regulation of biological process
GO:0071289	P	cellular response to nickel ion
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network