result

Gene information

Detail information of AfisC1G01926

Location

Gene	Chr	Start	End	Strand
AfisC1G01926	chr1	333036010	333039814	+

Sequences

CDS

>AfisC1G01926
ATGGCTGCAGCTTCAAATTCCTTTGGAATTAGAGACGAAGAACAATTAAAGCAACATCAGCCACAACAACAAGGGACTGCAACTGCAGCTCAAAGTGGAAGTACTGCTGCTAAAAAGAAGCGAAATCTTCCAGGAACTCCAAATCCAGATGCAGAAGTAATTGCACTTTCACCCAAATCACTAATGGCAACCAACCGATTCATATGCGAGGTATGCCAAAAAGGATTTCAAAGAGAGCAAAACCTACAATTGCATCGAAGAGGTCACAATCTACCATGGAAATTACGCCAAAAGAGCACTAAAGAAGTAAGAAGAAAAGTGTACTTATGTCCCGAACCAACTTGCGTGCACCATGACCCGTCACGTGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTCAGTCGAAAGCACGGTGAAAAGAAGTGGAAATGTGAGAAATGCTCGAAGAAATATGCGGTGCAATCAGATTGCAAAGCACATGCCAAGACTTGTGGCACTAGGGAGTATAGATGTGATTGTGGCACTCTCTTCTCAAGGAGGGATAGCTTCATAACACATCGAGCATTTTGCGATGCATTAGCACAAGAAAGTGCTCGACTACCACCGAGCTTTTCAACCCTAGGGAACCATCTATATGGCACCACTAACGCGATAGGTCTAAACCTCTCTCACCAAGTCAACACTCAACTCTCCTCCTTGCAAGAACAAAACCACGCCGACCTCCTCCGCCTTGGAGGCGGCCCTACCTTCAACCATCTCCACCCTTCTCCTTTCCAATTCACATCGAATCACCTAGATTTCAACGATGATAACAGCGGCAACGACAACAACAACAATAACAACAATCAAGTTTGTGCAAAGCCTTCTCCTTTCAATCATGGCTTAATGCAACTTCCCCATGAACTACAAAATCCTACAAGCAATTCCTCACCATTCAACCTAAGCTTCTTTGCAAACGGAAACCCTAACCCTAACGAACATGATCACTTAATGAACAACAACGAACATCCTAACAACATCAATGACATGATGAACGACGCTCAAATGTCATCTATGTTCAACAACGTGCAGGGTCAGGAACAAGTTCTCCCTCAAATGTCGGCAACTGCTCTTCTGCAGAAGGCGGCTCAAATGGGAGCGACTACGAGCACCAATGATCAAACACAGCATATTAACGAGATCATGAATTCTTTTGCAAATGGAAATAGTACTATGTTCGGAGTTTCTATGGGTTTTGAAACAGGTTTATGTGGAGTGGATGAAAGGAGTAAATTTGAGCGAGGGTTGACGAATTCTGGGAGTATAAGTGATGGGCTGACTAGGGATTTTCTTGGAGTAGGAAGTATTATGAGAGGAATGGCGGGTGGGATGCAGCAACAGCAACATATTTCTTTGGATTCCGAGTTCATTAAGTCTGCAACTTCTTCTTCTTCAAGGTCTTTTGCTGGTACTGGAAGCTTACAATGA

Protein

Gene

>AfisC1G01926
ATTTTGTTTCATTTTTCATTTCTTGTTTTGTACCTATATATGTGTATCATCTGAATTTCTTTTAATTTTGAGTGCAACGTGAGTTTGTTTGAATTTCTATATTATTTTGTTGTTTTGTCAATCTAGGAAGAATCATACTAAAGTTAATAGCTGGCTAGCTATAGTTCTACCCAATTTTTTTCATTTAACCTTTTTTTTTTTCCTTCTTAATTAATTTTGTTTTTCCTCTTGTCTTCAGACTCGTGTGTTATCAAGAAAGAAATCAAGAACTACCTATAAAGGAATTCAACTTGTTTTTTTTTGCTGGAAATAAAATCAAAGATGGCTGCAGCTTCAAATTCCTTTGGAATTAGAGACGAAGAACAATTAAAGCAACATCAGCCACAACAACAAGGGACTGCAACTGCAGCTCAAAGTGGAAGTACTGCTGCTAAAAAGAAGCGAAATCTTCCAGGAACTCCAAGCAAGTGTTCCTACACATTTGATTTTTATTTTTTGTTATTGTTTTTGATTTTTCTGTGTACATGAATTCACAACAAAATAATTAGGATATGTTTCTAGCTGGCATGAATTTAGTTGTGATAGTGAAATCAAAGGAAAAAACTTTTTTTTTCTTTATCCTTATCCAATACATATGTTCTAAAAAACTTTACTGTTTGTGCATCCTACTTAAATTTCAGCTTCTGATTAAATACACATGAAATAAGCTTTTTTCAGCTCGGTGTTATCTAAATATTTTTCACTTTCAAGTTTACCTAATACTCAATTTTCAATAGATTACTGTAGCTTTCTCCAATTCCCAATCCACATCGCAAAACCTAACAATTATTCTGCATTCATGCACATAGTTACTTGCTACATGTATCTTACCAAACCTGATCATTTATTTATTTTTTTAATATTCACTATTCATTTATTTTTATTTTTTTAATTTATCAGATCCAGATGCAGAAGTAATTGCACTTTCACCCAAATCACTAATGGCAACCAACCGATTCATATGCGAGGTATGCCAAAAAGGATTTCAAAGAGAGCAAAACCTACAATTGCATCGAAGAGGTCACAATCTACCATGGAAATTACGCCAAAAGAGCACTAAAGAAGTAAGAAGAAAAGTGTACTTATGTCCCGAACCAACTTGCGTGCACCATGACCCGTCACGTGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTCAGTCGAAAGCACGGTGAAAAGAAGTGGAAATGTGAGAAATGCTCGAAGAAATATGCGGTGCAATCAGATTGCAAAGCACATGCCAAGACTTGTGGCACTAGGGAGTATAGATGTGATTGTGGCACTCTCTTCTCAAGGTAATGTTTATGAATTCATATTTCATTCTATGGCATTTCATTTTCAAATTATTCAGAATATGCATTTGAATACTTTCTCAAGTTTACAATTCAATATTTGATTTTCATGGCCTTAAAATAAAAGGAAGTTTTTGAAAGTTGATATAACTTTGCACAATTGCACTTATCATTTTTAAATTTGTTGTTCATTCAGGTACTATAGATCATAACGAATGACACAAAAGATTAATAACTTTTTGAGAAACACATATTTCGATACATTTTGGGGATAACTACTGAAAAAGAATAGGCATTAAAAATGAAAATGTCCATTACTAGACATTTTTGAAATTTCAATGATTTTGCTTGAGTTAACAAGAAAGTAATAGCATTAGAGAGTGGCTAATTATTTTAGATGCTTTGAACACGGTATTTAGATTAAGATTGAAAAGAAAATTCAACAGTTGTAGGACTGTTACATGACAATTATTGGGTCATGATGATACAATGAAACCATAATTCAAATCACATCAACATGGATTCCATCAAAATGATTTTTATTTGTTACCAAAAGTTCATTTTGGGAAAAGTCTTTCTTTTTAGGGTTTTGTAGGGTAATTAAAATTAGGGTTGTTATATGATTGGAAGGTGAAAAAACACAGCAACATGTGAACAGATTAAAAGGGACTAGACATGGTCAGAGAGTTTTCACACAGATTCACGTGTCAGCGATGTACAACTTTGTTTGTTCTCGGTTGGCTACATTTGTACCTAGCTCCATCTTTTCATGAATACGTTATTGTTATAGCTGTACCTTGAAATTTGAGCCCAAATATTCAATTTTTATTCAAAAACTTCCCTTAAATTAAGACTGAATGCAATAATGTGATTATTTGGGGTCCATCGTTCCTGCAAGATTCCAAGTAAACGGTGAAATAGAAATAAATTTTAGTATATTCATTTTCAACGCGAGTGATATGTGTGAATTAAATGAGTTAATATGCTGAATCCGGACGTAATTTATTAATGTGGGTCTTCCATGAACTTACAAAATTCTTTGACAGGGGAATAATGCAAGGAATAATGTAATCAATGTGATGACTTGATAAGTATTGAATTTAATGAAGTCTGAGAAGTTATTTTCATGTTTGTTGCAAAAACTCTTTCTTAGTATTAAATGAAGTGATGTGCACAATTTGCTGAAACAAGGTTGGTGCTTCATTTTTGGCATTAGGTCAAAGGTTCATCATACTATCTGAACCATAAAATCAAATTTTGGAAATTATTTAGATTGTACTAGGCAATTACTTTTACATAGTTAAAGTAAATTAAAATATCGTTTATTTAAGTCGGTCTAAACAATCCATATGTTGCTTAGCGTTCATACATTTTGCCAACAACTTATAAAGAGACAAAATAAATTATTTTAGGGTTTGATAGGTCATAATCAACAGATGCATGATTATAAGTTGTTATTCGCTCTAAAAATGTGTACTTGTCACTATGCTCTTACGCAGGAGGGATAGCTTCATAACACATCGAGCATTTTGCGATGCATTAGCACAAGAAAGTGCTCGACTACCACCGAGCTTTTCAACCCTAGGGAACCATCTATATGGCACCACTAACGCGATAGGTCTAAACCTCTCTCACCAAGTCAACACTCAACTCTCCTCCTTGCAAGAACAAAACCACGCCGACCTCCTCCGCCTTGGAGGCGGCCCTACCTTCAACCATCTCCACCCTTCTCCTTTCCAATTCACATCGAATCACCTAGATTTCAACGATGATAACAGCGGCAACGACAACAACAACAATAACAACAATCAAGTTTGTGCAAAGCCTTCTCCTTTCAATCATGGCTTAATGCAACTTCCCCATGAACTACAAAATCCTACAAGCAATTCCTCACCATTCAACCTAAGCTTCTTTGCAAACGGAAACCCTAACCCTAACGAACATGATCACTTAATGAACAACAACGAACATCCTAACAACATCAATGACATGATGAACGACGCTCAAATGTCATCTATGTTCAACAACGTGCAGGGTCAGGAACAAGTTCTCCCTCAAATGTCGGCAACTGCTCTTCTGCAGAAGGCGGCTCAAATGGGAGCGACTACGAGCACCAATGATCAAACACAGCATATTAACGAGATCATGAATTCTTTTGCAAATGGAAATAGTACTATGTTCGGAGTTTCTATGGGTTTTGAAACAGGTTTATGTGGAGTGGATGAAAGGAGTAAATTTGAGCGAGGGTTGACGAATTCTGGGAGTATAAGTGATGGGCTGACTAGGGATTTTCTTGGAGTAGGAAGTATTATGAGAGGAATGGCGGGTGGGATGCAGCAACAGCAACATATTTCTTTGGATTCCGAGTTCATTAAGTCTGCAACTTCTTCTTCTTCAAGGTCTTTTGCTGGTACTGGAAGCTTACAATGAGGGGAAGTTAAGAAATCGCGCATGGAATGTGATGGTATAGTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020705077.1	5.7e-117	protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3.1	3.0e-86	ID1-like zinc finger protein 2
trEMBL	A0A2I0X8J3	4.1e-117	Zinc finger protein MAGPIE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02070.1	47.24	7e-103	371	AtIDD5;IDD5	indeterminate(ID)-domain 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G01926	AT2G02070.1	508	161	17	38	456	52	541	47.24	7e-103	371
AfisC1G01926	AT2G02080.1	464	176	14	32	454	48	482	46.98	4e-98	355
AfisC1G01926	AT5G66730.1	453	186	12	35	448	29	457	45.03	1e-92	337

Ortholog group

Species	Genes
Allium cepa	g1250.t1
Allium fistulosum	AfisC1G01926
Allium sativum	Asa7G02054.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12171.5	zf-C2H2_jaz	Family	67	89	23.5	4.5e-05

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005783	C	endoplasmic reticulum
GO:0005634	C	nucleus
GO:0007029	P	endoplasmic reticulum organization
GO:0008270	F	zinc ion binding
GO:0008356	P	asymmetric cell division
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009590	P	detection of gravity
GO:0009705	C	plant-type vacuole membrane
GO:0009937	P	regulation of gibberellic acid mediated signaling pathway
GO:0009958	P	positive gravitropism
GO:0009959	P	negative gravitropism
GO:0009965	P	leaf morphogenesis
GO:0010029	P	regulation of seed germination
GO:0010031	P	circumnutation
GO:0010051	P	xylem and phloem pattern formation
GO:0010075	P	regulation of meristem growth
GO:0010150	P	leaf senescence
GO:0010168	C	ER body
GO:0010431	P	seed maturation
GO:0010601	P	positive regulation of auxin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0016298	F	lipase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032527	P	protein exit from endoplasmic reticulum
GO:0042803	F	protein homodimerization activity
GO:0043621	F	protein self-association
GO:0045604	P	regulation of epidermal cell differentiation
GO:0046982	F	protein heterodimerization activity
GO:0048364	P	root development
GO:0048444	P	floral organ morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	P	photoperiodism, flowering
GO:0051302	P	regulation of cell division
GO:0052689	F	carboxylic ester hydrolase activity
GO:2000012	P	regulation of auxin polar transport
GO:2000904	P	regulation of starch metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network