result

Gene information

Detail information of AfisC1G02078

Location

Gene	Chr	Start	End	Strand
AfisC1G02078	chr1	360139671	360143263	-

Sequences

CDS

>AfisC1G02078
ATGTCTTTTCCTTCATCTACTTCTTACAGTCAAATGTTCCCTTATTATCCCGATTCTCCTCAAGTTTCTTCCTCGTCTCCATATCAAATGACCAATATACATTCATCATTCATATCAGACAACAATGACTCCCCGTTACTGTCCAACATATCTAACGACATGGAGTTCGATGAAAATGACATAAAAATGAAGCTTCAAGAACTCGAGCGAGCATTACTAAGCGATGACAACGATATGGAAGAAGAAAACTGGGCTGACACCGTAAAAGAGCTGCTCTCTAATTCGAGCTCAAACTCGCCAAAAGAGTCTTCTTCAGACTCAAACATAAGCAGCAGCGTTAGTGTTACTCGAACACCAAAAATGTTGCTCTTCGACTGTGCTTTAGCAATATCAGAAGGAAACATAAATGAAGCATCTGTAATAATCTCCGAGTTAAGACAATTAGTGTCAATTCAAGGTGACCCACCTCAGCGACTTGCAGCTTATTTAGTAGAAGGTCTTGTTGCTAGAATGGCCTCCTCAGGCCAAGGCCTGTATAAAGCTCTCAAATGCAAAGAACCAGACTCTTCTGATCGACTCTCTGCAATGCAAATATTGTTTGAGGTATGTCCTTGCTTCAAGTTCGGGTTCATGGCAGCTAATGGTGCCATTCTAGAAGCTTGCAAGGATGAAACAAGTGTGCATATAATCGATTTTGACATAAATCAAGGAAGTCAGTATTATAATTTGATAAGAGATTTCTCTAAACTAGATGCTAGAAAAGTTAGATTGAGGATCACTGGTGTGGATGATCCAGAATCGGTACAAAGAAAAGTAGGAGGATTGGAGATTATTGGTAAAAGATTGGGAAAACTTGCTGAAGATTTTGGAGTGTCATTTAAGTTTAAAGCGATCGCGTCTAAGGTGTCAGATGTTACTCCTTCGATGCTTGATTGTTGTGTTGGTGAGGCTTTAGTTGTGAATTTTGCATTTCAACTTCATCATATGCCGGATGAGAGTGTTTCGACTTTTAATCAAAGAGATCATCTTCTTCGAATGGTAAAGAGTTTAGAGCCTAAGTTGGTAACGGTTGTGGAGCAGGACGTTAACACAAATACAGCTCCGTTTTTTCCAAGGTTTGTGGAGGTTTACAATTACTACTTAGCTGTATTTGAATCACTTGATGCGACAATCCCAAGAGAGAGCGCGGATAGGATGAATGTGGAAAAACAATGTCTTGCACGAGACATTGTTAACATCGTGGCATGTGAAGGCACTGATCGTATTGAAAGGTATGAAGCAGCTGGGAAATGGAGGGCTAGGATGAACATGGCAGGATTTGAGTCCCTTCCACTTAGCTCTAATGTGAATGAAACAATTAAAACATTGCTGATGAAGTCATATGGACATCGATACAAACACAAAGAGGAAAATGGATCGTTGTACTTTGGCTGGGAGGATAAGATTCTGGTTGTGGCTTCAGCATGGAAGTAG

Protein

Gene

>AfisC1G02078
TTATTTAACACTAGTCCTTTTATTTAATTCAGCAATCTGTTGGCTTCGAATCGTTTACAGCAAAATACGACGTACAGTGGTAGACTGGTAGTTGAGTTTTTTCCCATCTTCTTCTTTGTGTACAAAAAGAAGAATTTCTTTATGCTTCTGTTTCTTATTCTTTGACCCAGCAAAACTAATATTATTATTTCCTCGATATTGATTGTACATCAGAATTTATTTTTATTCCTCAATTATTCAACCGAGAGCTGTTGAAATCGCAGAGATTTCTTTATCTGGGCTCTGATCTAAACTCGGTAAGATTTCTTTGCTTAATTTTTGGTTTTCAGCATGGTTATTTCTAATATTCGTGCTTTATTTCAATTTCTATTTTGATTTATAAACACATATGCTCATCTTCATTTCATCTATACAAGGGAACAATTTATTTTGCGATAATTTATCCGAAGATCTAAAGAGAAAAACTTATTGTCATACAGTTTTTTTTTTATTTTCATTCTGTAACTTGTTTTATTTACCTCGCATACCATTAATTTTATCCTATCCATGCTCATTGCACCTTGATCTTTGGAACTTATACCTTGAAATTTACTCCTTGATTAGAATATTCTTAATTGTTTTCTCTTATACTGCAGTATACGAAGTGTTCGAATTGAACTCAGTGTTGGTATATGCTTAATTGTATCATTTGCAATTATTTGGTTAACTCATGACTATCAAACAGTAACTGAAAAAACATAAAAATAAAATAAATAAATAAGTGCTAGAAAACATGTGGCTCTTTTGCGTAATGGAAATATAACCTTTAATCTAATAAATAAGCCCAGTTCTATGATATTCCTATAAAATCACAACAGTAAATATGGTTACTGATTTCCTTAGATATCAGGTGCATGACTGCATCTTATTAGCTATTAAGAACAGTGTTTCATTTTCCATGTTATATTTTAGTTCATTATTGTATATATATGCTTCAATTTGTTCTCTTGCTTGCAGACTTATTTCAAAAGCAGATATAGTTCTTCTGAGTAAATATCATGTCTTTTCCTTCATCTACTTCTTACAGTCAAATGTTCCCTTATTATCCCGATTCTCCTCAAGTTTCTTCCTCGTCTCCATATCAAATGACCAATATACATTCATCATTCATATCAGACAACAATGACTCCCCGTTACTGTCCAACATATCTAACGACATGGAGTTCGATGAAAATGACATAAAAATGAAGCTTCAAGAACTCGAGCGAGCATTACTAAGCGATGACAACGATATGGAAGAAGAAAACTGGGCTGACACCGTAAAAGAGCTGCTCTCTAATTCGAGCTCAAACTCGCCAAAAGAGTCTTCTTCAGACTCAAACATAAGCAGCAGCGTTAGTGTTACTCGAACACCAAAAATGTTGCTCTTCGACTGTGCTTTAGCAATATCAGAAGGAAACATAAATGAAGCATCTGTAATAATCTCCGAGTTAAGACAATTAGTGTCAATTCAAGGTGACCCACCTCAGCGACTTGCAGCTTATTTAGTAGAAGGTCTTGTTGCTAGAATGGCCTCCTCAGGCCAAGGCCTGTATAAAGCTCTCAAATGCAAAGAACCAGACTCTTCTGATCGACTCTCTGCAATGCAAATATTGTTTGAGGTATGTCCTTGCTTCAAGTTCGGGTTCATGGCAGCTAATGGTGCCATTCTAGAAGCTTGCAAGGATGAAACAAGTGTGCATATAATCGATTTTGACATAAATCAAGGAAGTCAGTATTATAATTTGATAAGAGATTTCTCTAAACTAGATGCTAGAAAAGTTAGATTGAGGATCACTGGTGTGGATGATCCAGAATCGGTACAAAGAAAAGTAGGAGGATTGGAGATTATTGGTAAAAGATTGGGAAAACTTGCTGAAGATTTTGGAGTGTCATTTAAGTTTAAAGCGATCGCGTCTAAGGTGTCAGATGTTACTCCTTCGATGCTTGATTGTTGTGTTGGTGAGGCTTTAGTTGTGAATTTTGCATTTCAACTTCATCATATGCCGGATGAGAGTGTTTCGACTTTTAATCAAAGAGATCATCTTCTTCGAATGGTAAAGAGTTTAGAGCCTAAGTTGGTAACGGTTGTGGAGCAGGACGTTAACACAAATACAGCTCCGTTTTTTCCAAGGTAATATCTCTTTGTCATGCACCACCGCTATTGAAATACAAGTAGGGTTGAATGCATCAAATTTTACATTTTGTTCTACCATATTGTGAAAAATGAAATGTGGACATGAATGTATTTACTATGGAGCCTAACCTCCTATGTTGGGCAAATTCACTTAATTTTTACATTTAATTTTATTCAAATGTTTAAGATGAAGTGTCAATGACTGTATTTAGTCTTTCTCTTAAATATTAAGTAACACGCTACATCTCTGCAAGGACACTAATACCATATTTAAGTTTGCCACCATTACATAGACCAATTCAAGGATTTGGGACCCTTTTTGTTCCTCAAGAAATTTCTGTGTATGGTATAAAGCTATGCATATTAATTATTTTTTATGTTAATCTCCTTGTTACTTCTACTTTTAGTAACTTTACCACTTTGGTCAACCATCTTGGTTCATATGAACGTGTAAACTTTTGTAGTTTTACTAGAGTAGGGAATCTTTGTACTGTTCTGAGCCAGTTTATGAACAGATGTTTGAAAAGTATAGCTAAGAGTGGTTTTTTCCTCCTTGAAATATGTTTGGAAATTTACCTACTTGGATCTTGTTATGCCTAGATAGTGTATATTCTACTCTGTATTATGCTTTCTTTGCATTTCTGAAAAGGAAAAAGAAACTGTTTTATAGCTTATTCATCTATGAACAGGTTTGTGGAGGTTTACAATTACTACTTAGCTGTATTTGAATCACTTGATGCGACAATCCCAAGAGAGAGCGCGGATAGGATGAATGTGGAAAAACAATGTCTTGCACGAGACATTGTTAACATCGTGGCATGTGAAGGCACTGATCGTATTGAAAGGTAAGATTTTATTTCTTATTGTTTTCAAAACTTCATACATAACAATATATTAATGGTTAACTGGATACAGTCACCAAAAAAGATAACGTTTCAAGACATATTCAAGTTAAAATAGTATTATAGCTTTAAGTTTCAGTCAAAAGTCAATTTTTTTTTCCGTATCAATTGTCAAAATGTTAGGTATGAAGCAGCTGGGAAATGGAGGGCTAGGATGAACATGGCAGGATTTGAGTCCCTTCCACTTAGCTCTAATGTGAATGAAACAATTAAAACATTGCTGATGAAGTCATATGGACATCGATACAAACACAAAGAGGAAAATGGATCGTTGTACTTTGGCTGGGAGGATAAGATTCTGGTTGTGGCTTCAGCATGGAAGTAGCAGTATATCTGTTGTCACTGTTCTGAATGTACATGAATTACATAGTGTGTTGCTATATGTATTTTAGAGCTCCACTGACCTTTACTGATCTAATCTAAATTGGCTATCGTGTGGTTGTGACGTCAATTATGATTATTACCTGATTTATGAAGAACATAATGTGGTGTATTATCCTATATTCTGGAAAAGAAAGCTATAGAGATCTTTGAGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262092.1	6.2e-188	scarecrow-like protein 1 isoform X1
Swissprot	Q9SDQ3.1	1.0e-155	GRAS family protein 4
trEMBL	A0A2I0AE23	5.5e-178	Scarecrow-like protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G21450.1	64.81	2e-170	595	SCL1	SCARECROW-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02078	AT1G21450.1	449	142	5	55	490	148	593	64.81	2e-170	595
AfisC1G02078	AT5G48150.2	476	217	5	16	490	40	490	48.95	2e-124	442
AfisC1G02078	AT5G48150.1	476	217	5	16	490	40	490	48.95	2e-124	442

Ortholog group

Species	Genes
Allium cepa	g498252.t1
Allium fistulosum	AfisC1G02078
Allium sativum	Asa7G01760.1
Arabidopsis thaliana	AT1G21450.1; AT5G52510.1
Oryza sativa	LOC_Os01g65900.1; LOC_Os02g45760.1; LOC_Os04g49110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	122	490	432.7	9.6e-130

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000290	P	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0004048	F	anthranilate phosphoribosyltransferase activity
GO:0005829	C	cytosol
GO:0004871	F	signal transducer activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009570	C	chloroplast stroma
GO:0009640	P	photomorphogenesis
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0033962	P	cytoplasmic mRNA processing body assembly
GO:0043565	F	sequence-specific DNA binding
GO:0045087	P	innate immune response
GO:0048519	P	negative regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network