result

Gene information

Detail information of AfisC1G02169

Location

Gene	Chr	Start	End	Strand
AfisC1G02169	chr1	376723258	376726707	-

Sequences

CDS

>AfisC1G02169
ATGAAGGGAAAAGTTTCATTCAGAATTTTGTATGTTAGGCCAAAAATCACAATGGTTCCTACACCAATGGGGAATTATCTTCATGTTTCAAAAGTGCGCGACGAGATTGTTTCTGCATACATGAAAGAAATAGAATGCAAAACTGAGTCAATGCTTCTACCCTACAGAAAAATGTGTAGTCACAGCAAGGTAGAGGCAGAAGCAGCAGTAATTGAATCTGATGATGTAGTAGAAGCAATATCAGGAGAGGTTAATAAATTTAGGATAAGCAAATTGGTTATAGGAGCTTCTTCTAGAAATATTTTTACTAGGCAATTCAAAGGCACCAAAGTTTCATCTAGACTCTCAGAATGCATTCCCAGATTCTGTACGATGTATGTCATTTCAAAAGGAAAGTTAAAGTCAATACATGCTTCAACATCGAAGATTGATAGCTGCAGATTGCATGGAGCAGCTTCGAGTACTACTTCATGCAGCAGCAGTTTCAGTCAGTCTTCAAGGGAACACTCTGTTCTAAGTCAGTGTGGCAGGGAGAAGTCTGAAACTGGAAGTCAATCCTTTTCTTCACAGGAATACTTTACAAGTTCCACCTCTAATTTATCGGATATGCGAAGTGAGCCTATTTATCAGAGTTTTCAAACTGATACCATTTCTTGGAATTCTGATAAAGTATCAGGATCAGATATCACAAAAAGCTCAATAATATCAAATAATGAGGTTAATGTTGATTTTGAGCTTGAAAGACTACGAATAGAACTAAAGCATCTTCAAGGCATGTACAATGTGGCTCAGAAAGAATCTTTAGATGCATCCCAACAATTGAACAAATTAAAAGCAAGCCAAGAAGAGGAGGCATTAAAACTAAATAGTATACGAAGAAAAGAAGAAAAGGTAATACAAACAGCAAAGAACGAAAGGGAGAGACGAGAAAAATTAGAAAAAGAATTCAAATATGTGAGACAATGTGTTGAAAAAGAAGCATTCGAAAGAATGGATGCAGAAGAATACGCTGCTCGTGAACTTCATGAAAAGCAGAGGCTCGAGGATGTTGTAGCATGCAGAAAAGAAAATTATTATAAGAAATATGAATGGGAAGAAATTGAATCTGCCACATCATCCTTTTCTGATGAACTTAAGATAGGAGCAGGAGCAAATGGAACGGTTTATAAGGCTAGCCTTCATCACACTGTTGCTGCAGTAAAAGTTTTGAACTCTACGGAGGGGAAAGGAACAAAGCAGTTCAATCAAGAGCTTGAGATTTTGAGTAGAATTCGACATCCACATCTGCTGCTGCTTCTAGGTGCATGTCCAAATCGCAGCTGCCTAGTTTATGAATACATGGAAAATGGAAGCCTTGAAGACAGGTTACAGTGCAAGAACAATACACCACCACTCCCATGGCAATACCGCTACAGAATAATTTACGAAATTGCCACTGCTCTTAGCTTTTTACACAACTGTAAACCCAGTCCTATAATCCACCGCGATTTAAAACCTGCAAACATTTTGCTCGATAAAAACTATGTCAGCAAAATAGGCGATGTGGGACTATCAACGATTATGGCTCCGGTAGATTTTGGTGAATCTACCATGTATAAAAATACCGCACCTGCTGGAACATTCTTTTACATTGACCCAGAGTATCAAAGATCGGGTATTGTCTCAGAAAAATCTGATATTTATGCGATAGGCATGATTATTTTACGTGTGATTACTGGAAAGCCAGCAATGGGACTTGCCTATACAGCAGAAAAGGCAATGGAAGAGGACGATTTGGTAAATATTTTAGATGGTTCAGCAGGGCACTGGCCTATTGAAGAAACTCGCAAATTAGCACTTCTAGGTTTAAACTGCGTTGAATTAAGAGGAAAAGATAGGCCAAATTTACAGGATCATATTCTTCCAGTTCTGGAAAAACTTGCGCATATTGCATGTAATGTGCAAGATTTAGCAACACCAAGCCATTTTATTTGCCCAATACTTCAGGAAGTGATGGATGATCCTTGTGTTGCATCGGATGGATACACGTATGAAAGGAGAGCAATTGAAAAATGGTATGAACAGAATGATAAATCTCCATTGACAAATATGAATTTGCAGAGCAAAGAACTCATATTGAATCATTCACTTCTTTCTGCAATCAAGAAATGGAAGATTACTTGTTAA

Protein

Gene

>AfisC1G02169
CTATGTACATTTCTCTATACTTTCTTTATTTATTAATCTTACTCTTCATCAATTTGCATTCTTATATAATATAAAGAAAAGAGGAAGACCTCACATGAAAATTGCAGGTGTTTCTTATCAGCAAAAACACAAATTTTATGCCTCCTTGTACATAGCTGAAAGTTGTTGGTTTTGTTCCTCGAATTAAACGCTTGAAAGCAAAGGAAATGGAAATAGAAGAAACTGTGGAAATGGATGACGATCGGCTATCTTCTTCAACAGTAACAGTTGCAGTAGCAGTAAATGGCAGTAAAAATAGCAAGCAAGCATTGAAATGGGCTTTGAAATTCACCAATGAAGGGAAAAGTTTCATTCAGAATTTTGTATGTTAGGCCAAAAATCACAATGGTTCCTACACCAAGTAATTTTTCATTTTTTTTTCCATTCTTCATCTTTTTTTTTTCTTGTTTTGTTCTACAAAAAGATACTCAGGCAGTAAACATCATACATATTTTTCTGAATTTTATTTCTAGTGGGGAATTATCTTCATGTTTCAAAAGTGCGCGACGAGATTGTTTCTGCATACATGAAAGAAATAGAATGCAAAACTGAGTCAATGCTTCTACCCTACAGAAAAATGTGTAGTCACAGCAAGGTGAATTTCGTATCAAGAGTCCTCATAAAGGAAAATTTTCTCCAAGAACTAAGTCAAAAATATTCATGCAGGTAGAGGCAGAAGCAGCAGTAATTGAATCTGATGATGTAGTAGAAGCAATATCAGGAGAGGTTAATAAATTTAGGATAAGCAAATTGGTTATAGGAGCTTCTTCTAGAAATATTTTTACTAGGTATAAGCTTCTGATCATCTGTACCGCCTTATTCTGATGGTGTTTAACTGACCAGGTTATGTTTATACTTTATAGGCAATTCAAAGGCACCAAAGTTTCATCTAGACTCTCAGAATGCATTCCCAGATTCTGTACGATGTATGTCATTTCAAAAGGAAAGTTAAAGTCAATACATGCTTCAACATCGAAGATTGATAGCTGCAGATTGCATGGAGCAGCTTCGAGTACTACTTCATGCAGCAGCAGTTTCAGTCAGTCTTCAAGGGAACACTCTGGTAAATAAAATTATTGTTTTTTAAAGTAAATTTTAATACAATCATGTATCGTATGACTTCGGACCTTTGTTTCCTTTCAGTTCTAAGTCAGTGTGGCAGGGAGAAGTCTGAAACTGGAAGTCAATCCTTTTCTTCACAGGAATACTTTACAAGTTCCACCTCTAATTTATCGGATATGCGAAGTGAGCCTATTTATCAGAGTTTTCAAACTGATACCATTTCTTGGAATTCTGATAAAGTATCAGGATCAGATATCACAAAAAGCTCAATAATATCAAATAATGAGGTAACCATCCTTAGTTTCTGCATAAATGTATGTACAAGTTTCATGTAATTTACTAGTATATATTCAGGTTAATGTTGATTTTGAGCTTGAAAGACTACGAATAGAACTAAAGCATCTTCAAGGCATGTACAATGTGGCTCAGAAAGAATCTTTAGATGCATCCCAACAAGTAAATGTTTTCATATACTTCCCTGTGTATATCAGTAAAACTTACTCGTAATATTTGTACTATCGTTTTCTTCTTCATCAGTTGAACAAATTAAAAGCAAGCCAAGAAGAGGAGGCATTAAAACTAAATAGTATACGAAGAAAAGAAGAAAAGGTAATACAAACAGCAAAGAACGAAAGGGAGAGACGAGAAAAATTAGAAAAAGAATTCAAATATGTGAGACAATGTGTTGAAAAAGAAGCATTCGAAAGAATGGATGCAGAAGAATACGCTGCTCGTGAACTTCATGAAAAGCAGAGGCTCGAGGATGTTGTAGCATGCAGAAAAGAAAATTATTATAAGAAATATGAATGGGAAGAAATTGAATCTGCCACATCATCCTTTTCTGATGAACTTAAGATAGGAGCAGGAGCAAATGGAACGGTTTATAAGGCTAGCCTTCATCACACTGTTGCTGCAGTAAAAGTTTTGAACTCTACGGAGGGGAAAGGAACAAAGCAGTTCAATCAAGAGGTACCCATTCGAAAATCATGCTCAACGTGCACATGTGCATGTCTTTTTCCCTATTTTTGGCATATAGATGCTTTTGTGTAAAGTGGAAGATATATACACTTTACACTATATCATGCTTGCTGAGCGCAAGAACATCAATGCTTGTAAAACTAAATGAAACTATCAATATGAATGTCAAAATTTCTTACAGATTTTGTTTATATTCCAGCTTGAGATTTTGAGTAGAATTCGACATCCACATCTGCTGCTGCTTCTAGGTGCATGTCCAAATCGCAGCTGCCTAGTTTATGAATACATGGAAAATGGAAGCCTTGAAGACAGGTTACAGTGCAAGAACAATACACCACCACTCCCATGGCAATACCGCTACAGAATAATTTACGAAATTGCCACTGCTCTTAGCTTTTTACACAACTGTAAACCCAGTCCTATAATCCACCGCGATTTAAAACCTGCAAACATTTTGCTCGATAAAAACTATGTCAGCAAAATAGGCGATGTGGGACTATCAACGATTATGGCTCCGGTAGATTTTGGTGAATCTACCATGTATAAAAATACCGCACCTGCTGGAACATTCTTTTACATTGACCCAGAGTATCAAAGATCGGGTATTGTCTCAGAAAAATCTGATATTTATGCGATAGGCATGATTATTTTACGTGTGATTACTGGAAAGCCAGCAATGGGACTTGCCTATACAGCAGAAAAGGCAATGGAAGAGGACGATTTGGTAAATATTTTAGATGGTTCAGCAGGGCACTGGCCTATTGAAGAAACTCGCAAATTAGCACTTCTAGGTTTAAACTGCGTTGAATTAAGAGGAAAAGATAGGCCAAATTTACAGGATCATATTCTTCCAGTTCTGGAAAAACTTGCGCATATTGCATGTAATGTGCAAGATTTAGCAACACCAAGCCATTTTATTTGCCCAATACTTCAGGTAGTAAAATTTTCAGCTACTATGAATTGAATTTTTCAAACGAACTATGAATTTTGATAGAAACTAATTATGTAGGAAGTGATGGATGATCCTTGTGTTGCATCGGATGGATACACGTATGAAAGGAGAGCAATTGAAAAATGGTATGAACAGAATGATAAATCTCCATTGACAAATATGAATTTGCAGAGCAAAGAACTCATATTGAATCATTCACTTCTTTCTGCAATCAAGAAATGGAAGATTACTTGTTAATTATATTAGAAAACATATTTTTTTTCTTTTTCCCGGGGCTTTGCTTGTTGATGTACGTACTCTTTTTGTGTGTAGTTTGTTAATTGTATGTTTTGTTGAGTATATGCCTTGAAAAGTTAACGTATGCTTTGTTGAGTATATGCCTTTAAAAGTAAATGCTAAAGACGAGTACTATAAAACAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263495.1	2.3e-223	U-box domain-containing protein 35-like isoform X1
Swissprot	Q9SW11.2	1.1e-161	Serine/threonine-protein kinase
trEMBL	A0A5P1F9V4	1.7e-223	RING-type E3 ubiquitin transferase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G25160.1	45.16	0.0	665		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC1G02169	AT4G25160.1	795	354	10	2	720	46	834	45.16	665
AfisC1G02169	AT5G61560.1	766	367	11	5	718	36	791	43.99	634
AfisC1G02169	AT5G61560.2	764	368	10	5	718	36	789	43.98	631

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC1G02169
Allium sativum	Asa7G02164.1
Arabidopsis thaliana	AT4G25160.1; AT5G61550.1; AT5G61550.2
Oryza sativa	LOC_Os03g01160.2; LOC_Os06g04880.1; LOC_Os10g41220.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	376	607	131.8	2.6e-38
PF04564.12	U-box	Domain	653	718	58.2	6.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004672	F	protein kinase activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0030139	C	endocytic vesicle
GO:0009506	C	plasmodesma
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009786	P	regulation of asymmetric cell division
GO:0009793	P	embryo development ending in seed dormancy
GO:0009986	C	cell surface
GO:0010311	P	lateral root formation
GO:0042803	F	protein homodimerization activity
GO:0048829	P	root cap development
GO:0051510	P	regulation of unidimensional cell growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network