result

Gene information

Detail information of AfisC1G02193

Location

Gene	Chr	Start	End	Strand
AfisC1G02193	chr1	383386487	383387946	-

Sequences

CDS

Protein

Gene

>AfisC1G02193
ATGATGTTAGATTACGACTGGACTAATAACCCAGCAGCGGCTGCAGCGGCAATGATGCTCTTCGGAGAAGAAACAAATACTAACCATGTCGATGTCCAAAATAGTCATCATCATAACAATCAGATGTTCATGAATCACTACAATAACATGGATTATTTTCAACAAGCTCATGATCATCATCAAGGTATTCCTACTACTGCCTTATTCTCGAATGTTGAATATGTAGGGTGTCATCATCCATTAGTGCCTGTAGCATCTAGGATAGGATTGGATCTTGGTATTAGGACATATTTTGCTACTGGCTCCGAAGAGAATGAGAGGGGAAGGCGGAATAGTAATATGAATATGATGATAGGAAGGAGGAGGAGGAGAAGGATAGCAAGGTGTCAAGCAGAAGGATGCGGGAAGGATCTTACACTAGCAAAGCATTATCATAGAAGGCATAAGGTGTGTGAATACCATTCTAAGGCATCTATGGTTGTCACTGCTGGCCTGTCTCAGAGATTTTGCCAGCAATGTAGCAGGTATTATTTATGCTATTTTCAGATATTGTACACTTTTTTACTAGTTACAAGCAAGTTTAGTACAATACCTTATTAAAAATTAATGAATAATCATACCATGTAGGCAATATATTCATAATGCGAATTGTAAGAAAGTTAACAAGTTGCTAAAATAAACAGCCTCTAGCCTCTAGTTTGTTAAAACCCTAGCTTTGGATAAGTAGTCTGCATGTTTAATATTCTTAATTAACTTCAATTTTATATTTGATTAATTTGGTTAGCACTGAGTAGACAACAGATCATACATAAAATAATAAGCACCAGCCTATGTTTTGTAAATTTTTCCTAGCATTCTTTCTCCGTTATTTAAGAGATTCATTAACATGTATTAATAAACATAAATTATACGTATAAGTAGCTATAGTTAGCTTATTTCTTGGCATGAATACTGTGTCTTAAAATTCCACTGGTAGGTTTCATATACTATCAGAATTCGATCAAGGCAAACGAAGCTGTAGAAAACGGTTGGCTGATCACAACCGACGCAGAAGGAAATCTCAAGACCTAACGACAACATCCACGTCAATGTCCATCAATACCAATCCAATCAACAACAACAATAACGACACCACATCATCATCAACAACAATATTGATAGGCAACAAATCACAATTCAACTCAGAAAATTTGCAAATTGAAATAGGAACAAAATTAACAGAAGCATGTTCTTCAGTTACAACTCATCATGATCCACAGGTGCATTTGGATATATTTCCAGCACCCCAAATGGAATTAGGGCTAACTGCATCATCATCTGCAGTCAGTACTACCTGTACTACAATGCAACAAAACAAATCTTGTAATTTGTCTAAACTCAGAGAATACCGTGAGCTGGGAAATCGAATTCCTGCTAGCTGGGTTGATGACGAAGCAGAAGAAATGTATCACAACAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020085290.1	1.4e-37	squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3.2	5.2e-34	Squamosa promoter-binding-like protein 8
trEMBL	A0A199V997	9.9e-38	Squamosa promoter-binding-like protein 8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02065.1	57.34	6e-40	161	SPL8	squamosa promoter binding protein-like 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02193	AT1G02065.1	143	60	1	84	225	143	285	57.34	6e-40	161
AfisC1G02193	AT1G27370.4	164	63	5	58	206	104	253	43.90	3e-30	129
AfisC1G02193	AT1G27370.3	164	63	5	58	206	104	253	43.90	3e-30	129

Ortholog group

Species	Genes
Allium cepa	g227954.t1
Allium fistulosum	AfisC1G02193
Allium sativum	Asa7G02189.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	129	202	103.8	3.6e-30

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008361	P	regulation of cell size
GO:0009941	C	chloroplast envelope
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010321	P	regulation of vegetative phase change
GO:0044212	F	transcription regulatory region DNA binding
GO:0042127	P	regulation of cell proliferation
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	P	anther development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network